miRNA display CGI


Results 1 - 20 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21400 3' -61.3 NC_004812.1 + 82860 0.73 0.324243
Target:  5'- cGAGCGCGGGgugaGGUgGUUGagggCGGCCg -3'
miRNA:   3'- aCUCGUGCCCgg--CCAgCAGCa---GCCGG- -5'
21400 3' -61.3 NC_004812.1 + 46497 0.74 0.290615
Target:  5'- cGAGCACGaGGuuGGUCccggggGUCGUCugggggagcagGGCCg -3'
miRNA:   3'- aCUCGUGC-CCggCCAG------CAGCAG-----------CCGG- -5'
21400 3' -61.3 NC_004812.1 + 100654 0.74 0.290615
Target:  5'- cGAGCcgcgcCGGGCCGGgccUCGgCGUCgGGCCc -3'
miRNA:   3'- aCUCGu----GCCCGGCC---AGCaGCAG-CCGG- -5'
21400 3' -61.3 NC_004812.1 + 60007 0.74 0.297116
Target:  5'- cGGGUccGCgGGGCCGG-CGUCGUCGaCCu -3'
miRNA:   3'- aCUCG--UG-CCCGGCCaGCAGCAGCcGG- -5'
21400 3' -61.3 NC_004812.1 + 126966 0.74 0.303062
Target:  5'- cGGGCACGGcggcgacGCCGG-CGUCcUCGGCg -3'
miRNA:   3'- aCUCGUGCC-------CGGCCaGCAGcAGCCGg -5'
21400 3' -61.3 NC_004812.1 + 117629 0.74 0.308424
Target:  5'- -cGGCGCGGGCCgccgggcgcggcggGGUCG-CGggcCGGCCg -3'
miRNA:   3'- acUCGUGCCCGG--------------CCAGCaGCa--GCCGG- -5'
21400 3' -61.3 NC_004812.1 + 121911 0.73 0.317292
Target:  5'- cGGGCGCGGGCCuGagGUCG--GGCCu -3'
miRNA:   3'- aCUCGUGCCCGGcCagCAGCagCCGG- -5'
21400 3' -61.3 NC_004812.1 + 129011 0.73 0.317292
Target:  5'- cGGGCGCGGGcCCGGg-GcCGgCGGCCc -3'
miRNA:   3'- aCUCGUGCCC-GGCCagCaGCaGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 155407 0.73 0.317292
Target:  5'- cGGGC-CGGGCCGGgCGUgGUggCGGCg -3'
miRNA:   3'- aCUCGuGCCCGGCCaGCAgCA--GCCGg -5'
21400 3' -61.3 NC_004812.1 + 142930 0.75 0.271784
Target:  5'- cGGGCccGCGGGCCcgcuaacGcCGUCGUCGGCUu -3'
miRNA:   3'- aCUCG--UGCCCGGc------CaGCAGCAGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 8026 0.75 0.271784
Target:  5'- gGGGCGCGGGCCGGcCucCGcCGGCa -3'
miRNA:   3'- aCUCGUGCCCGGCCaGcaGCaGCCGg -5'
21400 3' -61.3 NC_004812.1 + 149108 0.75 0.265728
Target:  5'- gGGGCGgGGGuugggcgccCCGGUCGUCcgcgCGGCCg -3'
miRNA:   3'- aCUCGUgCCC---------GGCCAGCAGca--GCCGG- -5'
21400 3' -61.3 NC_004812.1 + 130900 0.82 0.096669
Target:  5'- -cGGCGCgGGGCCGGgggCGUCGcCGGCCc -3'
miRNA:   3'- acUCGUG-CCCGGCCa--GCAGCaGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 60216 0.78 0.174566
Target:  5'- cGAGCGCGaGCgCGG-CGUCGcCGGCCa -3'
miRNA:   3'- aCUCGUGCcCG-GCCaGCAGCaGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 128490 0.76 0.216063
Target:  5'- cGAGacgucggGCGGGCCGGUCcaGUUGcCGGCCc -3'
miRNA:   3'- aCUCg------UGCCCGGCCAG--CAGCaGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 7852 0.76 0.226365
Target:  5'- gGGGCGgGGGUCGGUCGUag-CGGCg -3'
miRNA:   3'- aCUCGUgCCCGGCCAGCAgcaGCCGg -5'
21400 3' -61.3 NC_004812.1 + 5871 0.76 0.23167
Target:  5'- aUGGGCGCGGGCCGGggggCG-CGggcgCGGgCu -3'
miRNA:   3'- -ACUCGUGCCCGGCCa---GCaGCa---GCCgG- -5'
21400 3' -61.3 NC_004812.1 + 91397 0.75 0.253945
Target:  5'- aGAGguUGGcGCaGG-CGUCGUCGGCCu -3'
miRNA:   3'- aCUCguGCC-CGgCCaGCAGCAGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 129475 0.75 0.253945
Target:  5'- cGGGCACGGcgGCCaGGUCGcCGccguagcccUCGGCCa -3'
miRNA:   3'- aCUCGUGCC--CGG-CCAGCaGC---------AGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 81791 0.75 0.253945
Target:  5'- cGGGaGgGGGCCGG-CGgCGUCGGCCc -3'
miRNA:   3'- aCUCgUgCCCGGCCaGCaGCAGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.