Results 21 - 40 of 427 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21405 | 3' | -55.7 | NC_004812.1 | + | 121195 | 0.66 | 0.915077 |
Target: 5'- --aGCAGCGCgcCCUGGucgaACAGCaugccgcccaccgGGGUc -3' miRNA: 3'- guaCGUCGCGauGGACC----UGUUG-------------CCCG- -5' |
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21405 | 3' | -55.7 | NC_004812.1 | + | 94756 | 0.66 | 0.899029 |
Target: 5'- --cGCGGCGCUggccgccgaguucGCCcgcguccacccggagUGGGCccacGCGGGCc -3' miRNA: 3'- guaCGUCGCGA-------------UGG---------------ACCUGu---UGCCCG- -5' |
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21405 | 3' | -55.7 | NC_004812.1 | + | 123821 | 0.66 | 0.890408 |
Target: 5'- gGUGCcgcgGGCGggGCCcGGGCGccCGGGCc -3' miRNA: 3'- gUACG----UCGCgaUGGaCCUGUu-GCCCG- -5' |
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21405 | 3' | -55.7 | NC_004812.1 | + | 110376 | 0.66 | 0.890408 |
Target: 5'- --gGCGGUGCUG-CUGGAC--CGGGa -3' miRNA: 3'- guaCGUCGCGAUgGACCUGuuGCCCg -5' |
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21405 | 3' | -55.7 | NC_004812.1 | + | 65762 | 0.66 | 0.903508 |
Target: 5'- --cGCGGCGCcgGCUUccGCGccGCGGGCg -3' miRNA: 3'- guaCGUCGCGa-UGGAccUGU--UGCCCG- -5' |
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21405 | 3' | -55.7 | NC_004812.1 | + | 32686 | 0.66 | 0.890408 |
Target: 5'- --gGCcGgGCcgGCCcgGGACcGCGGGCg -3' miRNA: 3'- guaCGuCgCGa-UGGa-CCUGuUGCCCG- -5' |
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21405 | 3' | -55.7 | NC_004812.1 | + | 151289 | 0.66 | 0.903508 |
Target: 5'- --gGCGGCGCc-CCggcGGACGACGcGCu -3' miRNA: 3'- guaCGUCGCGauGGa--CCUGUUGCcCG- -5' |
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21405 | 3' | -55.7 | NC_004812.1 | + | 141684 | 0.66 | 0.909705 |
Target: 5'- uCAUGCAcGCGCccGCCUucGaGACcGCGGGg -3' miRNA: 3'- -GUACGU-CGCGa-UGGA--C-CUGuUGCCCg -5' |
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21405 | 3' | -55.7 | NC_004812.1 | + | 85268 | 0.66 | 0.909705 |
Target: 5'- --gGcCAGCGUcACCgcGGuguGCAGCGGGCc -3' miRNA: 3'- guaC-GUCGCGaUGGa-CC---UGUUGCCCG- -5' |
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21405 | 3' | -55.7 | NC_004812.1 | + | 122068 | 0.66 | 0.897075 |
Target: 5'- ----gGGCGCcggGCCUGGGC--UGGGCc -3' miRNA: 3'- guacgUCGCGa--UGGACCUGuuGCCCG- -5' |
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21405 | 3' | -55.7 | NC_004812.1 | + | 115437 | 0.66 | 0.903508 |
Target: 5'- --cGCGGCGCcgagagcGCCUGG-CGGCgcgccgcuGGGCu -3' miRNA: 3'- guaCGUCGCGa------UGGACCuGUUG--------CCCG- -5' |
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21405 | 3' | -55.7 | NC_004812.1 | + | 72144 | 0.66 | 0.890408 |
Target: 5'- --gGguGCGggGCCggGGGaGGCGGGCu -3' miRNA: 3'- guaCguCGCgaUGGa-CCUgUUGCCCG- -5' |
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21405 | 3' | -55.7 | NC_004812.1 | + | 145941 | 0.66 | 0.896419 |
Target: 5'- aCGUGguuGGCGCUGCgCUGGgugcgggGCAcccuCGGGCu -3' miRNA: 3'- -GUACg--UCGCGAUG-GACC-------UGUu---GCCCG- -5' |
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21405 | 3' | -55.7 | NC_004812.1 | + | 6157 | 0.66 | 0.890408 |
Target: 5'- --gGgGGuCGgggGCCUGGGCGGCGGGg -3' miRNA: 3'- guaCgUC-GCga-UGGACCUGUUGCCCg -5' |
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21405 | 3' | -55.7 | NC_004812.1 | + | 24860 | 0.66 | 0.903508 |
Target: 5'- --gGCGGCGCgGCUgcggGGGCGuccuCGaGGCg -3' miRNA: 3'- guaCGUCGCGaUGGa---CCUGUu---GC-CCG- -5' |
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21405 | 3' | -55.7 | NC_004812.1 | + | 150563 | 0.66 | 0.909705 |
Target: 5'- --cGCGGUGUcgauaGCCgcgcGGCGGCGGGCu -3' miRNA: 3'- guaCGUCGCGa----UGGac--CUGUUGCCCG- -5' |
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21405 | 3' | -55.7 | NC_004812.1 | + | 27656 | 0.66 | 0.890408 |
Target: 5'- aGUGCAGgGCgggguucACCUGaaACAcCGGGCu -3' miRNA: 3'- gUACGUCgCGa------UGGACc-UGUuGCCCG- -5' |
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21405 | 3' | -55.7 | NC_004812.1 | + | 129420 | 0.66 | 0.890408 |
Target: 5'- --gGCGGCGCggcgGCg-GGGCcGCGcGGCg -3' miRNA: 3'- guaCGUCGCGa---UGgaCCUGuUGC-CCG- -5' |
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21405 | 3' | -55.7 | NC_004812.1 | + | 110420 | 0.66 | 0.890408 |
Target: 5'- aCGUGC-GCGaCUuCCuguuggUGGAC-ACGGGCg -3' miRNA: 3'- -GUACGuCGC-GAuGG------ACCUGuUGCCCG- -5' |
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21405 | 3' | -55.7 | NC_004812.1 | + | 19710 | 0.66 | 0.903508 |
Target: 5'- --cGCGGCGCcggcgACC-GGcCGuCGGGCa -3' miRNA: 3'- guaCGUCGCGa----UGGaCCuGUuGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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