miRNA display CGI


Results 1 - 20 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21405 3' -55.7 NC_004812.1 + 95871 0.66 0.897075
Target:  5'- gGUGCGGUGg-GCCgagGGG--GCGGGCc -3'
miRNA:   3'- gUACGUCGCgaUGGa--CCUguUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 6157 0.66 0.890408
Target:  5'- --gGgGGuCGgggGCCUGGGCGGCGGGg -3'
miRNA:   3'- guaCgUC-GCga-UGGACCUGUUGCCCg -5'
21405 3' -55.7 NC_004812.1 + 107156 0.66 0.921379
Target:  5'- ---cCAGCGCcGCCUGG----CGGGCa -3'
miRNA:   3'- guacGUCGCGaUGGACCuguuGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 122068 0.66 0.897075
Target:  5'- ----gGGCGCcggGCCUGGGC--UGGGCc -3'
miRNA:   3'- guacgUCGCGa--UGGACCUGuuGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 123821 0.66 0.890408
Target:  5'- gGUGCcgcgGGCGggGCCcGGGCGccCGGGCc -3'
miRNA:   3'- gUACG----UCGCgaUGGaCCUGUu-GCCCG- -5'
21405 3' -55.7 NC_004812.1 + 151712 0.66 0.897075
Target:  5'- --gGCGGCGCgcgcgcgccgccgugGCC-GGGCGcgacgccACGGGCc -3'
miRNA:   3'- guaCGUCGCGa--------------UGGaCCUGU-------UGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 111561 0.66 0.897075
Target:  5'- --aGCGGCGCUGCaUGuuCGGCGuGGUg -3'
miRNA:   3'- guaCGUCGCGAUGgACcuGUUGC-CCG- -5'
21405 3' -55.7 NC_004812.1 + 72144 0.66 0.890408
Target:  5'- --gGguGCGggGCCggGGGaGGCGGGCu -3'
miRNA:   3'- guaCguCGCgaUGGa-CCUgUUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 27656 0.66 0.890408
Target:  5'- aGUGCAGgGCgggguucACCUGaaACAcCGGGCu -3'
miRNA:   3'- gUACGUCgCGa------UGGACc-UGUuGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 145941 0.66 0.896419
Target:  5'- aCGUGguuGGCGCUGCgCUGGgugcgggGCAcccuCGGGCu -3'
miRNA:   3'- -GUACg--UCGCGAUG-GACC-------UGUu---GCCCG- -5'
21405 3' -55.7 NC_004812.1 + 129420 0.66 0.890408
Target:  5'- --gGCGGCGCggcgGCg-GGGCcGCGcGGCg -3'
miRNA:   3'- guaCGUCGCGa---UGgaCCUGuUGC-CCG- -5'
21405 3' -55.7 NC_004812.1 + 65762 0.66 0.903508
Target:  5'- --cGCGGCGCcgGCUUccGCGccGCGGGCg -3'
miRNA:   3'- guaCGUCGCGa-UGGAccUGU--UGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 32686 0.66 0.890408
Target:  5'- --gGCcGgGCcgGCCcgGGACcGCGGGCg -3'
miRNA:   3'- guaCGuCgCGa-UGGa-CCUGuUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 153513 0.66 0.901603
Target:  5'- --gGCGGCGcCUcccccgccccgcccGCCUGGACcgacgcGCGcGGCg -3'
miRNA:   3'- guaCGUCGC-GA--------------UGGACCUGu-----UGC-CCG- -5'
21405 3' -55.7 NC_004812.1 + 94756 0.66 0.899029
Target:  5'- --cGCGGCGCUggccgccgaguucGCCcgcguccacccggagUGGGCccacGCGGGCc -3'
miRNA:   3'- guaCGUCGCGA-------------UGG---------------ACCUGu---UGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 24860 0.66 0.903508
Target:  5'- --gGCGGCGCgGCUgcggGGGCGuccuCGaGGCg -3'
miRNA:   3'- guaCGUCGCGaUGGa---CCUGUu---GC-CCG- -5'
21405 3' -55.7 NC_004812.1 + 110376 0.66 0.890408
Target:  5'- --gGCGGUGCUG-CUGGAC--CGGGa -3'
miRNA:   3'- guaCGUCGCGAUgGACCUGuuGCCCg -5'
21405 3' -55.7 NC_004812.1 + 110420 0.66 0.890408
Target:  5'- aCGUGC-GCGaCUuCCuguuggUGGAC-ACGGGCg -3'
miRNA:   3'- -GUACGuCGC-GAuGG------ACCUGuUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 16858 0.66 0.897075
Target:  5'- --cGCGGuCGCgggggaccgcgACCUGGuCGGCGuGGCc -3'
miRNA:   3'- guaCGUC-GCGa----------UGGACCuGUUGC-CCG- -5'
21405 3' -55.7 NC_004812.1 + 4790 0.66 0.890408
Target:  5'- --gGgGGCGggGCgaGGGCugguGCGGGCg -3'
miRNA:   3'- guaCgUCGCgaUGgaCCUGu---UGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.