miRNA display CGI


Results 1 - 20 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21405 3' -55.7 NC_004812.1 + 43 0.66 0.909705
Target:  5'- --cGCGGCGg-GCCgcgGGcGCGGCGGcGCg -3'
miRNA:   3'- guaCGUCGCgaUGGa--CC-UGUUGCC-CG- -5'
21405 3' -55.7 NC_004812.1 + 562 0.67 0.861489
Target:  5'- cCcgGCGcGCGCgGCCgcgUGGAgCcGCGGGCg -3'
miRNA:   3'- -GuaCGU-CGCGaUGG---ACCU-GuUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 583 0.67 0.883512
Target:  5'- --cGCGGCGCgGCCcccGGCccCGGGCg -3'
miRNA:   3'- guaCGUCGCGaUGGac-CUGuuGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 1937 0.68 0.820689
Target:  5'- --cGgGGCGCUccGCCcgucgGGGgGACGGGUg -3'
miRNA:   3'- guaCgUCGCGA--UGGa----CCUgUUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 2341 0.71 0.686969
Target:  5'- --cGCAGCGCgggcgGCa-GGGCGuCGGGCc -3'
miRNA:   3'- guaCGUCGCGa----UGgaCCUGUuGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 2514 0.69 0.794069
Target:  5'- gUcgGCGGCGCgGCCgucGAgcGCGGGCa -3'
miRNA:   3'- -GuaCGUCGCGaUGGac-CUguUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 2549 0.67 0.858406
Target:  5'- --cGCGGCGgUACUcgcgcggcggcagGGGC-ACGGGCg -3'
miRNA:   3'- guaCGUCGCgAUGGa------------CCUGuUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 2762 0.67 0.861489
Target:  5'- --aGCGGaCGUcGCaCUGcGCGGCGGGCa -3'
miRNA:   3'- guaCGUC-GCGaUG-GACcUGUUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 2813 0.67 0.869047
Target:  5'- --gGCGGCGCgc----GACGGCGGGCc -3'
miRNA:   3'- guaCGUCGCGauggacCUGUUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 3205 0.7 0.746867
Target:  5'- --cGCGGCGCagcggGCCcgaGGcgcGCGGCGGGCc -3'
miRNA:   3'- guaCGUCGCGa----UGGa--CC---UGUUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 3317 0.71 0.666536
Target:  5'- --cGCGGCGCgccagGCCUcggGGAagAGCGGGUg -3'
miRNA:   3'- guaCGUCGCGa----UGGA---CCUg-UUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 3439 0.69 0.794069
Target:  5'- --cGCGGCGCcagccGCCgcgGGGgucgggccCGGCGGGCg -3'
miRNA:   3'- guaCGUCGCGa----UGGa--CCU--------GUUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 3484 0.68 0.820689
Target:  5'- cCGU-CAGCGCggcggGCCgcGGGCG-CGGGCc -3'
miRNA:   3'- -GUAcGUCGCGa----UGGa-CCUGUuGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 3727 0.69 0.794069
Target:  5'- --cGgAGCGC-ACCUGG-CG-CGGGCc -3'
miRNA:   3'- guaCgUCGCGaUGGACCuGUuGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 3874 0.69 0.756549
Target:  5'- gCGUGCGGCGCaGCUcGcGCAgccagaggcGCGGGCg -3'
miRNA:   3'- -GUACGUCGCGaUGGaCcUGU---------UGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 3912 0.66 0.890408
Target:  5'- --gGCGGCGCggcgGCg-GGGCcGCGcGGCg -3'
miRNA:   3'- guaCGUCGCGa---UGgaCCUGuUGC-CCG- -5'
21405 3' -55.7 NC_004812.1 + 4183 0.7 0.746867
Target:  5'- --cGCGGCGCcgUACCcggcgGGAaCGGCGGGg -3'
miRNA:   3'- guaCGUCGCG--AUGGa----CCU-GUUGCCCg -5'
21405 3' -55.7 NC_004812.1 + 4790 0.66 0.890408
Target:  5'- --gGgGGCGggGCgaGGGCugguGCGGGCg -3'
miRNA:   3'- guaCgUCGCgaUGgaCCUGu---UGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 4942 0.71 0.666536
Target:  5'- --gGCGGCGCUGga-GGGCGgccgGCGGGCg -3'
miRNA:   3'- guaCGUCGCGAUggaCCUGU----UGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 4970 0.71 0.656273
Target:  5'- gCcgGCGGCgGCgagGCggGGGCGACGGGUc -3'
miRNA:   3'- -GuaCGUCG-CGa--UGgaCCUGUUGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.