miRNA display CGI


Results 1 - 20 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21405 3' -55.7 NC_004812.1 + 110887 0.73 0.563994
Target:  5'- cCGUGCAGCGg-GCCcucgugcaGGACAAcCGGGCc -3'
miRNA:   3'- -GUACGUCGCgaUGGa-------CCUGUU-GCCCG- -5'
21405 3' -55.7 NC_004812.1 + 154383 0.74 0.494597
Target:  5'- --cGCcGCGCgUGCgCUGGGCcGCGGGCc -3'
miRNA:   3'- guaCGuCGCG-AUG-GACCUGuUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 121931 0.74 0.504293
Target:  5'- --gGCcugAGCGCcgggggggACUUGGGCGGCGGGCu -3'
miRNA:   3'- guaCG---UCGCGa-------UGGACCUGUUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 48576 0.74 0.51407
Target:  5'- --cGCAGCGCcgACUUccGCGACGGGCg -3'
miRNA:   3'- guaCGUCGCGa-UGGAccUGUUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 76606 0.73 0.560957
Target:  5'- --cGCGGCGauggccucggacacgGCCUGGGCGACccgGGGCg -3'
miRNA:   3'- guaCGUCGCga-------------UGGACCUGUUG---CCCG- -5'
21405 3' -55.7 NC_004812.1 + 5869 0.73 0.563994
Target:  5'- aCAUG-GGCGCggGCCgggGGGCG-CGGGCg -3'
miRNA:   3'- -GUACgUCGCGa-UGGa--CCUGUuGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 61193 0.73 0.563994
Target:  5'- cCAUgGCAGCGCgucacucGCC-GGGCGcGCGGGCu -3'
miRNA:   3'- -GUA-CGUCGCGa------UGGaCCUGU-UGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 122168 0.73 0.563994
Target:  5'- --gGCcugGGCGCggGCCUGGGCcugggucuggugGGCGGGCu -3'
miRNA:   3'- guaCG---UCGCGa-UGGACCUG------------UUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 122441 0.73 0.563994
Target:  5'- --gGCGGCGUcuCCUcGGGCGGCGGGg -3'
miRNA:   3'- guaCGUCGCGauGGA-CCUGUUGCCCg -5'
21405 3' -55.7 NC_004812.1 + 147973 0.74 0.484032
Target:  5'- --cGCGGCGCUccgugcucauggcGCC-GGGCGGCGGGg -3'
miRNA:   3'- guaCGUCGCGA-------------UGGaCCUGUUGCCCg -5'
21405 3' -55.7 NC_004812.1 + 111259 0.74 0.475468
Target:  5'- --cGCGGUGCgGCCcgUGGGCG-CGGGCa -3'
miRNA:   3'- guaCGUCGCGaUGG--ACCUGUuGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 87622 0.74 0.475468
Target:  5'- --aGCAGCuGCUACCUGGugAACccGCa -3'
miRNA:   3'- guaCGUCG-CGAUGGACCugUUGccCG- -5'
21405 3' -55.7 NC_004812.1 + 24487 0.78 0.301255
Target:  5'- --gGCGGcCGCU-CCUGGACGGgGGGCc -3'
miRNA:   3'- guaCGUC-GCGAuGGACCUGUUgCCCG- -5'
21405 3' -55.7 NC_004812.1 + 81177 0.77 0.369451
Target:  5'- cCcgGCAcGUGCUcccccgccagcaGCCUGGACGcGCGGGCg -3'
miRNA:   3'- -GuaCGU-CGCGA------------UGGACCUGU-UGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 142274 0.76 0.410781
Target:  5'- aCGUGCGGCucccggaGCU-CCUGGACGA-GGGCc -3'
miRNA:   3'- -GUACGUCG-------CGAuGGACCUGUUgCCCG- -5'
21405 3' -55.7 NC_004812.1 + 5807 0.75 0.420446
Target:  5'- -cUGCGGgGCUGCggGGcGCGGCGGGCu -3'
miRNA:   3'- guACGUCgCGAUGgaCC-UGUUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 39267 0.75 0.420446
Target:  5'- --gGUAGCGCUGCaUGGGCAGCagcagcgccagGGGCg -3'
miRNA:   3'- guaCGUCGCGAUGgACCUGUUG-----------CCCG- -5'
21405 3' -55.7 NC_004812.1 + 6122 0.75 0.429351
Target:  5'- --gGCGGCggGCUGCCggGGAaGGCGGGCg -3'
miRNA:   3'- guaCGUCG--CGAUGGa-CCUgUUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 96758 0.75 0.438365
Target:  5'- aCGUGCGGCGC-GCCgucgcgagGaGGCGGCGGGUu -3'
miRNA:   3'- -GUACGUCGCGaUGGa-------C-CUGUUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 7782 0.75 0.442002
Target:  5'- cCGUGCGGCGCggccguguagGCCgcgGGAgaagccuaccugucuCGGCGGGCg -3'
miRNA:   3'- -GUACGUCGCGa---------UGGa--CCU---------------GUUGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.