miRNA display CGI


Results 1 - 20 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21405 3' -55.7 NC_004812.1 + 117353 1.12 0.001805
Target:  5'- cCAUGCAGCGCUACCUGGACAACGGGCg -3'
miRNA:   3'- -GUACGUCGCGAUGGACCUGUUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 146062 0.86 0.096724
Target:  5'- --cGCGGCGCUACgUGGACcagucGACGGGCg -3'
miRNA:   3'- guaCGUCGCGAUGgACCUG-----UUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 124226 0.83 0.151016
Target:  5'- --cGCGGCGC-ACCUGG-CGGCGGGCc -3'
miRNA:   3'- guaCGUCGCGaUGGACCuGUUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 94337 0.82 0.176056
Target:  5'- uGUGCGGCGCgGCCUGcGCGggGCGGGCg -3'
miRNA:   3'- gUACGUCGCGaUGGACcUGU--UGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 103146 0.8 0.237348
Target:  5'- gGUGCAGUaCUACCUGG-CcACGGGCg -3'
miRNA:   3'- gUACGUCGcGAUGGACCuGuUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 22273 0.8 0.249153
Target:  5'- gGUGCAG-GCUcucgACCUGGACGAUGaGGCg -3'
miRNA:   3'- gUACGUCgCGA----UGGACCUGUUGC-CCG- -5'
21405 3' -55.7 NC_004812.1 + 24487 0.78 0.301255
Target:  5'- --gGCGGcCGCU-CCUGGACGGgGGGCc -3'
miRNA:   3'- guaCGUC-GCGAuGGACCUGUUgCCCG- -5'
21405 3' -55.7 NC_004812.1 + 121164 0.78 0.315529
Target:  5'- -cUGCAGCGCUGCgaGGGC--CGGGUg -3'
miRNA:   3'- guACGUCGCGAUGgaCCUGuuGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 90267 0.77 0.327312
Target:  5'- aUcgGCGGCuGCUGCCccgccugcagcgcGGGCGACGGGCg -3'
miRNA:   3'- -GuaCGUCG-CGAUGGa------------CCUGUUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 20163 0.77 0.345591
Target:  5'- aUcgGCGGCGCUcgggccccgACCcGGGCgAGCGGGCg -3'
miRNA:   3'- -GuaCGUCGCGA---------UGGaCCUG-UUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 81177 0.77 0.369451
Target:  5'- cCcgGCAcGUGCUcccccgccagcaGCCUGGACGcGCGGGCg -3'
miRNA:   3'- -GuaCGU-CGCGA------------UGGACCUGU-UGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 12895 0.76 0.385974
Target:  5'- --aGCGGCGCUcgguGCCcccgGGGCGGCGcGGCg -3'
miRNA:   3'- guaCGUCGCGA----UGGa---CCUGUUGC-CCG- -5'
21405 3' -55.7 NC_004812.1 + 142274 0.76 0.410781
Target:  5'- aCGUGCGGCucccggaGCU-CCUGGACGA-GGGCc -3'
miRNA:   3'- -GUACGUCG-------CGAuGGACCUGUUgCCCG- -5'
21405 3' -55.7 NC_004812.1 + 39267 0.75 0.420446
Target:  5'- --gGUAGCGCUGCaUGGGCAGCagcagcgccagGGGCg -3'
miRNA:   3'- guaCGUCGCGAUGgACCUGUUG-----------CCCG- -5'
21405 3' -55.7 NC_004812.1 + 5807 0.75 0.420446
Target:  5'- -cUGCGGgGCUGCggGGcGCGGCGGGCu -3'
miRNA:   3'- guACGUCgCGAUGgaCC-UGUUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 36708 0.75 0.420446
Target:  5'- -cUGCGGgGCUGCggGGcGCGGCGGGCu -3'
miRNA:   3'- guACGUCgCGAUGgaCC-UGUUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 6122 0.75 0.429351
Target:  5'- --gGCGGCggGCUGCCggGGAaGGCGGGCg -3'
miRNA:   3'- guaCGUCG--CGAUGGa-CCUgUUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 59610 0.75 0.429351
Target:  5'- --cGCGGCGCUagaggGCgUGGGgGugGGGCg -3'
miRNA:   3'- guaCGUCGCGA-----UGgACCUgUugCCCG- -5'
21405 3' -55.7 NC_004812.1 + 37023 0.75 0.429351
Target:  5'- --gGCGGCggGCUGCCggGGAaGGCGGGCg -3'
miRNA:   3'- guaCGUCG--CGAUGGa-CCUgUUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 96758 0.75 0.438365
Target:  5'- aCGUGCGGCGC-GCCgucgcgagGaGGCGGCGGGUu -3'
miRNA:   3'- -GUACGUCGCGaUGGa-------C-CUGUUGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.