miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21406 5' -50.5 NC_004812.1 + 81540 0.66 0.992112
Target:  5'- cGCUcgGUGGCgGAGaUCGUCGACCa -3'
miRNA:   3'- uUGAugUACUGgUUCgAGUAGCUGGc -5'
21406 5' -50.5 NC_004812.1 + 86303 0.73 0.825864
Target:  5'- ---gGCAUGGCCGAGUUCcgCGAUCu -3'
miRNA:   3'- uugaUGUACUGGUUCGAGuaGCUGGc -5'
21406 5' -50.5 NC_004812.1 + 88301 0.67 0.990167
Target:  5'- gGugUGCAaccUGGCCAgcgucaaccuggcggAGUgcgUCGUCGGCCGg -3'
miRNA:   3'- -UugAUGU---ACUGGU---------------UCG---AGUAGCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 91036 0.67 0.986567
Target:  5'- uGACUcaccGCGUGcCCAGGgUCcUCGGCCa -3'
miRNA:   3'- -UUGA----UGUACuGGUUCgAGuAGCUGGc -5'
21406 5' -50.5 NC_004812.1 + 91503 0.71 0.92208
Target:  5'- gGGCUugGcGGCCGAGC-CggCGGCCGg -3'
miRNA:   3'- -UUGAugUaCUGGUUCGaGuaGCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 96585 0.66 0.99493
Target:  5'- -cCUGCAccUGACCGAGgUCGaCGacGCCGg -3'
miRNA:   3'- uuGAUGU--ACUGGUUCgAGUaGC--UGGC- -5'
21406 5' -50.5 NC_004812.1 + 98117 0.7 0.943146
Target:  5'- uACUACAUGGCCAAccagauccugcGCUacugCGACCa -3'
miRNA:   3'- uUGAUGUACUGGUU-----------CGAgua-GCUGGc -5'
21406 5' -50.5 NC_004812.1 + 100150 0.7 0.943146
Target:  5'- gGGCgGCggGGCgGGGCUCAUCGcGCCGc -3'
miRNA:   3'- -UUGaUGuaCUGgUUCGAGUAGC-UGGC- -5'
21406 5' -50.5 NC_004812.1 + 101796 0.68 0.973198
Target:  5'- -uCUGCAgcaccUGGCCcccAGGCUCG-CGGCCGg -3'
miRNA:   3'- uuGAUGU-----ACUGG---UUCGAGUaGCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 102221 0.75 0.759648
Target:  5'- ---gACAUGuCCGGGCUCGUCGGgCGg -3'
miRNA:   3'- uugaUGUACuGGUUCGAGUAGCUgGC- -5'
21406 5' -50.5 NC_004812.1 + 104172 0.67 0.989626
Target:  5'- gGGCUGCugguccUGGCCGGGCUgGcggCGGCCu -3'
miRNA:   3'- -UUGAUGu-----ACUGGUUCGAgUa--GCUGGc -5'
21406 5' -50.5 NC_004812.1 + 104388 0.71 0.92208
Target:  5'- cGCUACAUGGCCcuGGU--GUCGGCCa -3'
miRNA:   3'- uUGAUGUACUGGu-UCGagUAGCUGGc -5'
21406 5' -50.5 NC_004812.1 + 105487 0.66 0.99493
Target:  5'- gGACggaGCAggcGACCGGGCcCggCGGCCGa -3'
miRNA:   3'- -UUGa--UGUa--CUGGUUCGaGuaGCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 108071 0.68 0.970265
Target:  5'- cGGCUGCGUGAUCAc-CUCcUCGAUCGc -3'
miRNA:   3'- -UUGAUGUACUGGUucGAGuAGCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 109970 0.67 0.982859
Target:  5'- cGCUGC-UGuuuCCGGGCgcccgCGUCGACCc -3'
miRNA:   3'- uUGAUGuACu--GGUUCGa----GUAGCUGGc -5'
21406 5' -50.5 NC_004812.1 + 117105 1.06 0.013429
Target:  5'- cAACUACAUGACCAAGCUCAUCGACCGc -3'
miRNA:   3'- -UUGAUGUACUGGUUCGAGUAGCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 123055 0.67 0.988173
Target:  5'- cGGCUugGUGAgCAcgGGCcggucgUCGUCGGCCu -3'
miRNA:   3'- -UUGAugUACUgGU--UCG------AGUAGCUGGc -5'
21406 5' -50.5 NC_004812.1 + 123259 0.73 0.834628
Target:  5'- gAugUAgGUGACCAcguugaggAGCUCGUCGGCgGc -3'
miRNA:   3'- -UugAUgUACUGGU--------UCGAGUAGCUGgC- -5'
21406 5' -50.5 NC_004812.1 + 123572 0.67 0.984799
Target:  5'- aGGCgGCGcGGCCGGGCUCGagUCGuCCGu -3'
miRNA:   3'- -UUGaUGUaCUGGUUCGAGU--AGCuGGC- -5'
21406 5' -50.5 NC_004812.1 + 129104 0.67 0.984799
Target:  5'- gAGCU-CGUGGCCAcccuGCUCGUgggCGACUGc -3'
miRNA:   3'- -UUGAuGUACUGGUu---CGAGUA---GCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.