miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21408 5' -58.7 NC_004812.1 + 92193 0.66 0.791493
Target:  5'- cUGUCGcUGUUuCGgC-CCUCGCCCUCAg -3'
miRNA:   3'- -ACAGC-ACAAuGCgGuGGGGUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 50792 0.66 0.806431
Target:  5'- --------cGCGCCGccgccggccggagcCCCCACCCCCAa -3'
miRNA:   3'- acagcacaaUGCGGU--------------GGGGUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 138643 0.66 0.797694
Target:  5'- cGUCGg---GCGCCugacggccgccgucGCCCCgggcgACCCCCu -3'
miRNA:   3'- aCAGCacaaUGCGG--------------UGGGG-----UGGGGGu -5'
21408 5' -58.7 NC_004812.1 + 30607 0.66 0.790602
Target:  5'- gGUCGggcggcgGgacCGCCACCUgacacagCGCCCCCGu -3'
miRNA:   3'- aCAGCa------CaauGCGGUGGG-------GUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 41258 0.66 0.800331
Target:  5'- cGUUcgGUGUUugccCGCC-CCCgCugCCCCAa -3'
miRNA:   3'- aCAG--CACAAu---GCGGuGGG-GugGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 121077 0.66 0.791493
Target:  5'- cG-CGggcGUccCGCCcCCCCGCCCCUAa -3'
miRNA:   3'- aCaGCa--CAauGCGGuGGGGUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 134867 0.66 0.782518
Target:  5'- cGUCGgcgGcagACGCC-CCCCGguCCCUCAc -3'
miRNA:   3'- aCAGCa--Caa-UGCGGuGGGGU--GGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 135580 0.66 0.796812
Target:  5'- gGUCucgcgcaGCCACCCCaugcACCCCCGc -3'
miRNA:   3'- aCAGcacaaugCGGUGGGG----UGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 101752 0.66 0.791493
Target:  5'- --cCGUGcc-CGCCACCCCcggguagucGCCCUCGu -3'
miRNA:   3'- acaGCACaauGCGGUGGGG---------UGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 392 0.66 0.782518
Target:  5'- --------cGCGgCGCCCCGCCCCCc -3'
miRNA:   3'- acagcacaaUGCgGUGGGGUGGGGGu -5'
21408 5' -58.7 NC_004812.1 + 3137 0.66 0.80816
Target:  5'- gUGUCGcGgc-CGCCGCgcuccccUCCGCCCCCc -3'
miRNA:   3'- -ACAGCaCaauGCGGUG-------GGGUGGGGGu -5'
21408 5' -58.7 NC_004812.1 + 114576 0.66 0.800331
Target:  5'- --aCGgagUugGUgGCCCUGCCCCCGg -3'
miRNA:   3'- acaGCacaAugCGgUGGGGUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 86234 0.66 0.782518
Target:  5'- -uUCGgcgccUugGCCcuAUCCCGCCCCCGc -3'
miRNA:   3'- acAGCaca--AugCGG--UGGGGUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 99860 0.66 0.791493
Target:  5'- cGUCGga--GCGCUGCCgCaggGCCCCCAc -3'
miRNA:   3'- aCAGCacaaUGCGGUGGgG---UGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 47212 0.66 0.829239
Target:  5'- --cCGUGggggaccaacaGCCGCUCCGCCUCCGc -3'
miRNA:   3'- acaGCACaaug-------CGGUGGGGUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 7173 0.66 0.800331
Target:  5'- cGUC-UGggACGUguCCCCucucGCCCCCu -3'
miRNA:   3'- aCAGcACaaUGCGguGGGG----UGGGGGu -5'
21408 5' -58.7 NC_004812.1 + 73236 0.66 0.782518
Target:  5'- gGUCGg---GCgGgCGgCCCGCCCCCAg -3'
miRNA:   3'- aCAGCacaaUG-CgGUgGGGUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 23380 0.66 0.791493
Target:  5'- cGcCGUGUccguCGCCACgaucgCCGCCCUCAa -3'
miRNA:   3'- aCaGCACAau--GCGGUGg----GGUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 26890 0.66 0.800331
Target:  5'- cGUCacGUacGCGCuCACCaCCACCUCCAg -3'
miRNA:   3'- aCAGcaCAa-UGCG-GUGG-GGUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 138469 0.66 0.782518
Target:  5'- cUGUCGgggcGggGCGCCGCCCU-CUCCgAg -3'
miRNA:   3'- -ACAGCa---CaaUGCGGUGGGGuGGGGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.