miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21408 5' -58.7 NC_004812.1 + 144 0.67 0.726245
Target:  5'- cG-CGUGgcgccGCGCCGCCgCGCCCgCGg -3'
miRNA:   3'- aCaGCACaa---UGCGGUGGgGUGGGgGU- -5'
21408 5' -58.7 NC_004812.1 + 333 0.66 0.803825
Target:  5'- cGUCGggagGUgcguccacgcgcuCGCCACCCuCACUCUCGg -3'
miRNA:   3'- aCAGCa---CAau-----------GCGGUGGG-GUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 392 0.66 0.782518
Target:  5'- --------cGCGgCGCCCCGCCCCCc -3'
miRNA:   3'- acagcacaaUGCgGUGGGGUGGGGGu -5'
21408 5' -58.7 NC_004812.1 + 720 0.68 0.67713
Target:  5'- --cCGg---GCGCCgGCCCCGCCCCUc -3'
miRNA:   3'- acaGCacaaUGCGG-UGGGGUGGGGGu -5'
21408 5' -58.7 NC_004812.1 + 889 0.68 0.687057
Target:  5'- --------cGCGCC-CCCCACCCCCc -3'
miRNA:   3'- acagcacaaUGCGGuGGGGUGGGGGu -5'
21408 5' -58.7 NC_004812.1 + 1189 0.68 0.687057
Target:  5'- cGUCGccGUcgcCGCCGCCaCCACgCCCGg -3'
miRNA:   3'- aCAGCa-CAau-GCGGUGG-GGUGgGGGU- -5'
21408 5' -58.7 NC_004812.1 + 1525 0.68 0.67713
Target:  5'- cG-CGagGgcAUGCCGCCgCCGCCCCCc -3'
miRNA:   3'- aCaGCa-CaaUGCGGUGG-GGUGGGGGu -5'
21408 5' -58.7 NC_004812.1 + 1778 0.66 0.825936
Target:  5'- -cUCGgGggGCcgGCCGCUCCGCCCCg- -3'
miRNA:   3'- acAGCaCaaUG--CGGUGGGGUGGGGgu -5'
21408 5' -58.7 NC_004812.1 + 2566 0.72 0.480826
Target:  5'- cGUCGUcg-ACGaCgACCCCGCCUCCGa -3'
miRNA:   3'- aCAGCAcaaUGC-GgUGGGGUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 3137 0.66 0.80816
Target:  5'- gUGUCGcGgc-CGCCGCgcuccccUCCGCCCCCc -3'
miRNA:   3'- -ACAGCaCaauGCGGUG-------GGGUGGGGGu -5'
21408 5' -58.7 NC_004812.1 + 3172 0.7 0.587134
Target:  5'- --------cGCGCC-CCCCGCCCCCGa -3'
miRNA:   3'- acagcacaaUGCGGuGGGGUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 3422 0.67 0.745406
Target:  5'- cGgCGgcccuccgGCGCCGCCgCGCCCCCc -3'
miRNA:   3'- aCaGCacaa----UGCGGUGGgGUGGGGGu -5'
21408 5' -58.7 NC_004812.1 + 4082 0.72 0.462457
Target:  5'- cGcCGgcc-GCGCCGCCuCCGCCCCCu -3'
miRNA:   3'- aCaGCacaaUGCGGUGG-GGUGGGGGu -5'
21408 5' -58.7 NC_004812.1 + 4558 0.73 0.409696
Target:  5'- aGUC-UGgacucGCGCCACCCUuggACCCCCGg -3'
miRNA:   3'- aCAGcACaa---UGCGGUGGGG---UGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 4821 0.68 0.67713
Target:  5'- gGUCGgc--ACGCgGCCCCgacccaGCCCCCu -3'
miRNA:   3'- aCAGCacaaUGCGgUGGGG------UGGGGGu -5'
21408 5' -58.7 NC_004812.1 + 6009 0.69 0.617102
Target:  5'- cGUCGgcgcgcgGcgGCGCCGCCCCgucgaggaGCCCgCCGc -3'
miRNA:   3'- aCAGCa------CaaUGCGGUGGGG--------UGGG-GGU- -5'
21408 5' -58.7 NC_004812.1 + 6217 0.68 0.706772
Target:  5'- cG-CGg---ACGCCGCCCCugCCgCCGc -3'
miRNA:   3'- aCaGCacaaUGCGGUGGGGugGG-GGU- -5'
21408 5' -58.7 NC_004812.1 + 6959 0.69 0.617102
Target:  5'- --cCGUuucGCGCCcccccuucccccACCCCGCCCCCAu -3'
miRNA:   3'- acaGCAcaaUGCGG------------UGGGGUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 7173 0.66 0.800331
Target:  5'- cGUC-UGggACGUguCCCCucucGCCCCCu -3'
miRNA:   3'- aCAGcACaaUGCGguGGGG----UGGGGGu -5'
21408 5' -58.7 NC_004812.1 + 7429 0.74 0.344735
Target:  5'- cGUCGUugcuaggcgaccgGggACGCCGCCCCucGCCUCCGc -3'
miRNA:   3'- aCAGCA-------------CaaUGCGGUGGGG--UGGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.