miRNA display CGI


Results 41 - 60 of 491 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21409 3' -53.8 NC_004812.1 + 4933 0.66 0.968092
Target:  5'- gCCCGCggaggCGgCGCUGGAGGGCggccgGCGGg- -3'
miRNA:   3'- -GGGCGa----GCgGCGGCUUUUUG-----UGUCag -5'
21409 3' -53.8 NC_004812.1 + 107465 0.66 0.967783
Target:  5'- uUCCGUUggcgagcaGCCGCUGGAggaccacGAGCGCGGUg -3'
miRNA:   3'- -GGGCGAg-------CGGCGGCUU-------UUUGUGUCAg -5'
21409 3' -53.8 NC_004812.1 + 46924 0.66 0.967472
Target:  5'- gCCGCggcggacacaucCGCCGCCGAcAGcCGCGcGUCc -3'
miRNA:   3'- gGGCGa-----------GCGGCGGCUuUUuGUGU-CAG- -5'
21409 3' -53.8 NC_004812.1 + 66613 0.66 0.967159
Target:  5'- gCCGCUCcacgcccagGCCGUCGGcacgggcgaagcggGAGGCGC-GUCg -3'
miRNA:   3'- gGGCGAG---------CGGCGGCU--------------UUUUGUGuCAG- -5'
21409 3' -53.8 NC_004812.1 + 147490 0.66 0.967159
Target:  5'- aCCGUggCGCCGCgGGgguccgguggccccGAGGCGCcGUCu -3'
miRNA:   3'- gGGCGa-GCGGCGgCU--------------UUUUGUGuCAG- -5'
21409 3' -53.8 NC_004812.1 + 103152 0.66 0.966207
Target:  5'- gCCCGCUgCgucuggagcgcggggGCCGCCGuc-AGCGCGGcCc -3'
miRNA:   3'- -GGGCGA-G---------------CGGCGGCuuuUUGUGUCaG- -5'
21409 3' -53.8 NC_004812.1 + 118731 0.66 0.964907
Target:  5'- aCCCGCUgCGCCGCguucgUGAAcGACuACuccuGGUCu -3'
miRNA:   3'- -GGGCGA-GCGGCG-----GCUUuUUG-UG----UCAG- -5'
21409 3' -53.8 NC_004812.1 + 139914 0.66 0.964907
Target:  5'- gUCGCUCGCgcaccCGCCGGu---CGgGGUCg -3'
miRNA:   3'- gGGCGAGCG-----GCGGCUuuuuGUgUCAG- -5'
21409 3' -53.8 NC_004812.1 + 18477 0.66 0.964907
Target:  5'- cCCCGCgC-CCGCgGGGcccAGACACAGg- -3'
miRNA:   3'- -GGGCGaGcGGCGgCUU---UUUGUGUCag -5'
21409 3' -53.8 NC_004812.1 + 57959 0.66 0.964907
Target:  5'- cCCCGCgugCGCgCGUCGcgcccGGGCGCAG-Cg -3'
miRNA:   3'- -GGGCGa--GCG-GCGGCuu---UUUGUGUCaG- -5'
21409 3' -53.8 NC_004812.1 + 109045 0.66 0.964907
Target:  5'- cUCCGCgcuUCGCCaCCGAcucgaGGGGCACGG-Cg -3'
miRNA:   3'- -GGGCG---AGCGGcGGCU-----UUUUGUGUCaG- -5'
21409 3' -53.8 NC_004812.1 + 68247 0.66 0.964907
Target:  5'- gCCCGCaCGgCGUCGcGAAGC-CGGUUg -3'
miRNA:   3'- -GGGCGaGCgGCGGCuUUUUGuGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 100979 0.66 0.964907
Target:  5'- gUCCGCgagCGCCGgCGGcuguACGCGGa- -3'
miRNA:   3'- -GGGCGa--GCGGCgGCUuuu-UGUGUCag -5'
21409 3' -53.8 NC_004812.1 + 107864 0.66 0.964907
Target:  5'- gCCCGCgaaGgaGCCGggGGG-GCGGUCg -3'
miRNA:   3'- -GGGCGag-CggCGGCuuUUUgUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 2514 0.66 0.964907
Target:  5'- gUCgGCggCGCgGCCGucGAGCGCGGg- -3'
miRNA:   3'- -GGgCGa-GCGgCGGCuuUUUGUGUCag -5'
21409 3' -53.8 NC_004812.1 + 93058 0.66 0.964907
Target:  5'- gCCGUa-GCCGUCGAGGGGCACcuuGUa -3'
miRNA:   3'- gGGCGagCGGCGGCUUUUUGUGu--CAg -5'
21409 3' -53.8 NC_004812.1 + 66557 0.66 0.964907
Target:  5'- aCCCGCUCuGCCGUgGGcu--UGCGGUg -3'
miRNA:   3'- -GGGCGAG-CGGCGgCUuuuuGUGUCAg -5'
21409 3' -53.8 NC_004812.1 + 63725 0.66 0.964907
Target:  5'- -aCGC-CGUCGCCGAG----GCGGUCc -3'
miRNA:   3'- ggGCGaGCGGCGGCUUuuugUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 117346 0.66 0.964907
Target:  5'- cCCCgGCg-GCCGCCGA----CGCGGUg -3'
miRNA:   3'- -GGG-CGagCGGCGGCUuuuuGUGUCAg -5'
21409 3' -53.8 NC_004812.1 + 13114 0.66 0.964907
Target:  5'- gCCCGcCUCGCCgcguccagGCCGGggcGGAGCAggaAGUUg -3'
miRNA:   3'- -GGGC-GAGCGG--------CGGCU---UUUUGUg--UCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.