miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21410 3' -56.6 NC_004812.1 + 114064 1.12 0.001632
Target:  5'- aCCUCCCGGGGGGGCAGUAUGUCAAACa -3'
miRNA:   3'- -GGAGGGCCCCCCCGUCAUACAGUUUG- -5'
21410 3' -56.6 NC_004812.1 + 71686 0.82 0.170992
Target:  5'- cCCggcggCCCGGGGGGGC-GUGcUGUCGGGCc -3'
miRNA:   3'- -GGa----GGGCCCCCCCGuCAU-ACAGUUUG- -5'
21410 3' -56.6 NC_004812.1 + 110936 0.77 0.318934
Target:  5'- gCCgUCCCGGGGGGGCuuccagcacGGgcUGUCGuGCc -3'
miRNA:   3'- -GG-AGGGCCCCCCCG---------UCauACAGUuUG- -5'
21410 3' -56.6 NC_004812.1 + 107316 0.77 0.331374
Target:  5'- gCgUUCCGGGGGGGCGgccgcggucgccuuGUGUGUCGAu- -3'
miRNA:   3'- -GgAGGGCCCCCCCGU--------------CAUACAGUUug -5'
21410 3' -56.6 NC_004812.1 + 84024 0.77 0.341126
Target:  5'- cCCUCCUuGGGGGGCGGcguugGUGUCGGc- -3'
miRNA:   3'- -GGAGGGcCCCCCCGUCa----UACAGUUug -5'
21410 3' -56.6 NC_004812.1 + 12281 0.75 0.414186
Target:  5'- aCCUgCCCGGGGGGGCGGag---CGAAa -3'
miRNA:   3'- -GGA-GGGCCCCCCCGUCauacaGUUUg -5'
21410 3' -56.6 NC_004812.1 + 123963 0.75 0.42288
Target:  5'- cCCagCCCGGGGGGGCuGUucGUCucGCu -3'
miRNA:   3'- -GGa-GGGCCCCCCCGuCAuaCAGuuUG- -5'
21410 3' -56.6 NC_004812.1 + 77116 0.73 0.544663
Target:  5'- gCC-CCCGcGGGGGCGGUGgcgGUCGGu- -3'
miRNA:   3'- -GGaGGGCcCCCCCGUCAUa--CAGUUug -5'
21410 3' -56.6 NC_004812.1 + 54961 0.72 0.5506
Target:  5'- aCgCCCGGGGGGuaGCGGUAgagccccucggggGUCGGGCg -3'
miRNA:   3'- gGaGGGCCCCCC--CGUCAUa------------CAGUUUG- -5'
21410 3' -56.6 NC_004812.1 + 30814 0.72 0.564528
Target:  5'- gCC-CCaCGGGGGGGCAGggcggcGcCAGGCg -3'
miRNA:   3'- -GGaGG-GCCCCCCCGUCaua---CaGUUUG- -5'
21410 3' -56.6 NC_004812.1 + 73574 0.72 0.574533
Target:  5'- aCCUCCgGGcuGGGGUGGgggGUCAGGCg -3'
miRNA:   3'- -GGAGGgCCc-CCCCGUCauaCAGUUUG- -5'
21410 3' -56.6 NC_004812.1 + 5697 0.72 0.574533
Target:  5'- gUCUCCCagggccacGGGGGGGCGGgg-GUCugccGCg -3'
miRNA:   3'- -GGAGGG--------CCCCCCCGUCauaCAGuu--UG- -5'
21410 3' -56.6 NC_004812.1 + 36598 0.72 0.574533
Target:  5'- gUCUCCCagggccacGGGGGGGCGGgg-GUCugccGCg -3'
miRNA:   3'- -GGAGGG--------CCCCCCCGUCauaCAGuu--UG- -5'
21410 3' -56.6 NC_004812.1 + 61219 0.72 0.594658
Target:  5'- ----gCGGGGGGGCuggGGUGUGUCcGGCg -3'
miRNA:   3'- ggaggGCCCCCCCG---UCAUACAGuUUG- -5'
21410 3' -56.6 NC_004812.1 + 102910 0.72 0.594658
Target:  5'- aCCggcgCCuCGGGGGGGCGGccg--CGAACg -3'
miRNA:   3'- -GGa---GG-GCCCCCCCGUCauacaGUUUG- -5'
21410 3' -56.6 NC_004812.1 + 72042 0.72 0.594658
Target:  5'- --gUCUGGGGGGGCGGgggGUCGGGg -3'
miRNA:   3'- ggaGGGCCCCCCCGUCauaCAGUUUg -5'
21410 3' -56.6 NC_004812.1 + 146882 0.72 0.60173
Target:  5'- cCCUCCCGGggagauucaugcgcGGGGGCGGgcgGUCc--- -3'
miRNA:   3'- -GGAGGGCC--------------CCCCCGUCauaCAGuuug -5'
21410 3' -56.6 NC_004812.1 + 70909 0.71 0.635173
Target:  5'- aUCUCgCgCGGGGGGGCGGgagGUgGGAUc -3'
miRNA:   3'- -GGAG-G-GCCCCCCCGUCauaCAgUUUG- -5'
21410 3' -56.6 NC_004812.1 + 132557 0.71 0.645315
Target:  5'- uCCUCgaCCGGccGGGGGCGGUGcUGgaugCGGGCg -3'
miRNA:   3'- -GGAG--GGCC--CCCCCGUCAU-ACa---GUUUG- -5'
21410 3' -56.6 NC_004812.1 + 132611 0.71 0.645315
Target:  5'- uCCUCgaCCGGccGGGGGCGGUGcUGgaugCGGGCg -3'
miRNA:   3'- -GGAG--GGCC--CCCCCGUCAU-ACa---GUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.