miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21410 3' -56.6 NC_004812.1 + 45454 0.68 0.817818
Target:  5'- gCUCcgCCGGGGGGGCgAGgagccCGAGCg -3'
miRNA:   3'- gGAG--GGCCCCCCCG-UCauacaGUUUG- -5'
21410 3' -56.6 NC_004812.1 + 43253 0.7 0.714571
Target:  5'- aCC-CCCGGGgugaugguggcgaGGGGCAGgGUaUCGAACg -3'
miRNA:   3'- -GGaGGGCCC-------------CCCCGUCaUAcAGUUUG- -5'
21410 3' -56.6 NC_004812.1 + 100309 0.69 0.762863
Target:  5'- cCCUCCaggggcuCGGGGGGGaAGUGc-UCAAACu -3'
miRNA:   3'- -GGAGG-------GCCCCCCCgUCAUacAGUUUG- -5'
21410 3' -56.6 NC_004812.1 + 110105 0.69 0.763804
Target:  5'- cCCcCCCGGGGGGcGCGGgaga--AAACg -3'
miRNA:   3'- -GGaGGGCCCCCC-CGUCauacagUUUG- -5'
21410 3' -56.6 NC_004812.1 + 91619 0.69 0.773144
Target:  5'- --aCCCGGGGGGGgAGcuguccAUGUCGcuCg -3'
miRNA:   3'- ggaGGGCCCCCCCgUCa-----UACAGUuuG- -5'
21410 3' -56.6 NC_004812.1 + 72556 0.69 0.773144
Target:  5'- aCCgcgCCuCGGGGGGGCGccgGUGUaccGGCg -3'
miRNA:   3'- -GGa--GG-GCCCCCCCGUca-UACAgu-UUG- -5'
21410 3' -56.6 NC_004812.1 + 111621 0.68 0.791445
Target:  5'- aCCUCCUGaacuacGcGGGGCGcGUgGUGUCGAGCg -3'
miRNA:   3'- -GGAGGGCc-----C-CCCCGU-CA-UACAGUUUG- -5'
21410 3' -56.6 NC_004812.1 + 67764 0.68 0.800388
Target:  5'- -gUCCCGGGGGaGGCGGcggcccgGggcgCGGGCg -3'
miRNA:   3'- ggAGGGCCCCC-CCGUCaua----Ca---GUUUG- -5'
21410 3' -56.6 NC_004812.1 + 30396 0.68 0.817818
Target:  5'- uCCUCCgGGGGcGcGGCGGccu-UCAGGCa -3'
miRNA:   3'- -GGAGGgCCCC-C-CCGUCauacAGUUUG- -5'
21410 3' -56.6 NC_004812.1 + 72753 0.7 0.695707
Target:  5'- uCCgggggCCCGGGGGGGuCGGgcUGcUCccACa -3'
miRNA:   3'- -GGa----GGGCCCCCCC-GUCauAC-AGuuUG- -5'
21410 3' -56.6 NC_004812.1 + 7845 0.7 0.685699
Target:  5'- cUCUCUCGGGGcGGgGGUcgGUCGuAGCg -3'
miRNA:   3'- -GGAGGGCCCCcCCgUCAuaCAGU-UUG- -5'
21410 3' -56.6 NC_004812.1 + 70909 0.71 0.635173
Target:  5'- aUCUCgCgCGGGGGGGCGGgagGUgGGAUc -3'
miRNA:   3'- -GGAG-G-GCCCCCCCGUCauaCAgUUUG- -5'
21410 3' -56.6 NC_004812.1 + 107316 0.77 0.331374
Target:  5'- gCgUUCCGGGGGGGCGgccgcggucgccuuGUGUGUCGAu- -3'
miRNA:   3'- -GgAGGGCCCCCCCGU--------------CAUACAGUUug -5'
21410 3' -56.6 NC_004812.1 + 84024 0.77 0.341126
Target:  5'- cCCUCCUuGGGGGGCGGcguugGUGUCGGc- -3'
miRNA:   3'- -GGAGGGcCCCCCCGUCa----UACAGUUug -5'
21410 3' -56.6 NC_004812.1 + 54961 0.72 0.5506
Target:  5'- aCgCCCGGGGGGuaGCGGUAgagccccucggggGUCGGGCg -3'
miRNA:   3'- gGaGGGCCCCCC--CGUCAUa------------CAGUUUG- -5'
21410 3' -56.6 NC_004812.1 + 30814 0.72 0.564528
Target:  5'- gCC-CCaCGGGGGGGCAGggcggcGcCAGGCg -3'
miRNA:   3'- -GGaGG-GCCCCCCCGUCaua---CaGUUUG- -5'
21410 3' -56.6 NC_004812.1 + 5697 0.72 0.574533
Target:  5'- gUCUCCCagggccacGGGGGGGCGGgg-GUCugccGCg -3'
miRNA:   3'- -GGAGGG--------CCCCCCCGUCauaCAGuu--UG- -5'
21410 3' -56.6 NC_004812.1 + 73574 0.72 0.574533
Target:  5'- aCCUCCgGGcuGGGGUGGgggGUCAGGCg -3'
miRNA:   3'- -GGAGGgCCc-CCCCGUCauaCAGUUUG- -5'
21410 3' -56.6 NC_004812.1 + 72042 0.72 0.594658
Target:  5'- --gUCUGGGGGGGCGGgggGUCGGGg -3'
miRNA:   3'- ggaGGGCCCCCCCGUCauaCAGUUUg -5'
21410 3' -56.6 NC_004812.1 + 102910 0.72 0.594658
Target:  5'- aCCggcgCCuCGGGGGGGCGGccg--CGAACg -3'
miRNA:   3'- -GGa---GG-GCCCCCCCGUCauacaGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.