Results 21 - 40 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21431 | 3' | -57.6 | NC_004812.1 | + | 90638 | 0.7 | 0.657691 |
Target: 5'- uGC-UGGUUGacgagcgaGCGCGCcaggUCCUCGUCGcGGg -3' miRNA: 3'- -UGuACCAGC--------UGCGCG----AGGAGCAGC-CC- -5' |
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21431 | 3' | -57.6 | NC_004812.1 | + | 138623 | 0.7 | 0.67749 |
Target: 5'- --cUGGUgGGCGacagGCUCCaCGUCGGGc -3' miRNA: 3'- uguACCAgCUGCg---CGAGGaGCAGCCC- -5' |
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21431 | 3' | -57.6 | NC_004812.1 | + | 131120 | 0.7 | 0.687341 |
Target: 5'- gGCAUGGUgGGCGCGUcucuggacaUCCUCGUg--- -3' miRNA: 3'- -UGUACCAgCUGCGCG---------AGGAGCAgccc -5' |
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21431 | 3' | -57.6 | NC_004812.1 | + | 12990 | 0.7 | 0.696169 |
Target: 5'- cCAUGGUCugugacgGGCgGCGCUUgCUCcGUCGGGg -3' miRNA: 3'- uGUACCAG-------CUG-CGCGAG-GAG-CAGCCC- -5' |
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21431 | 3' | -57.6 | NC_004812.1 | + | 30380 | 0.7 | 0.697148 |
Target: 5'- gGCcgGGUCGGgGCuCUCCUC--CGGGg -3' miRNA: 3'- -UGuaCCAGCUgCGcGAGGAGcaGCCC- -5' |
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21431 | 3' | -57.6 | NC_004812.1 | + | 8945 | 0.69 | 0.706904 |
Target: 5'- ---cGGgcaGACGCGCUCC-CcUCGGGa -3' miRNA: 3'- uguaCCag-CUGCGCGAGGaGcAGCCC- -5' |
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21431 | 3' | -57.6 | NC_004812.1 | + | 82874 | 0.69 | 0.706904 |
Target: 5'- -gGUGGUUGAgggcggccgacaCGCGCaccUCCUCG-CGGGu -3' miRNA: 3'- ugUACCAGCU------------GCGCG---AGGAGCaGCCC- -5' |
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21431 | 3' | -57.6 | NC_004812.1 | + | 29308 | 0.69 | 0.706904 |
Target: 5'- aGCcgGGgccCGAugcaCGCGCUCC-CGUCGGc -3' miRNA: 3'- -UGuaCCa--GCU----GCGCGAGGaGCAGCCc -5' |
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21431 | 3' | -57.6 | NC_004812.1 | + | 154816 | 0.69 | 0.706904 |
Target: 5'- aGCcgGGgccCGAugcaCGCGCUCC-CGUCGGc -3' miRNA: 3'- -UGuaCCa--GCU----GCGCGAGGaGCAGCCc -5' |
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21431 | 3' | -57.6 | NC_004812.1 | + | 145940 | 0.69 | 0.715633 |
Target: 5'- gACGUGGUUGGCgcuGCGCUgggugcggggcacCCUCGggcUGGGg -3' miRNA: 3'- -UGUACCAGCUG---CGCGA-------------GGAGCa--GCCC- -5' |
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21431 | 3' | -57.6 | NC_004812.1 | + | 95570 | 0.69 | 0.7166 |
Target: 5'- gACGUGG-CGGucuCGcCGCUCgUCGUCGGc -3' miRNA: 3'- -UGUACCaGCU---GC-GCGAGgAGCAGCCc -5' |
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21431 | 3' | -57.6 | NC_004812.1 | + | 59987 | 0.69 | 0.7166 |
Target: 5'- uCGUGGcggcCGugGUGCUCCagcacggggacCGUCGGGg -3' miRNA: 3'- uGUACCa---GCugCGCGAGGa----------GCAGCCC- -5' |
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21431 | 3' | -57.6 | NC_004812.1 | + | 44603 | 0.69 | 0.7166 |
Target: 5'- -gGUGGugcUCGugGCccGCgUCCUCGUgGGGa -3' miRNA: 3'- ugUACC---AGCugCG--CG-AGGAGCAgCCC- -5' |
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21431 | 3' | -57.6 | NC_004812.1 | + | 67548 | 0.69 | 0.72046 |
Target: 5'- gGCGcGGUCGGCGCagaggucgaucagcaGCUCCUgGUCGu- -3' miRNA: 3'- -UGUaCCAGCUGCG---------------CGAGGAgCAGCcc -5' |
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21431 | 3' | -57.6 | NC_004812.1 | + | 150678 | 0.69 | 0.726228 |
Target: 5'- ---cGGUCGccccCGCGCUCCgggcggCGUCGcGGc -3' miRNA: 3'- uguaCCAGCu---GCGCGAGGa-----GCAGC-CC- -5' |
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21431 | 3' | -57.6 | NC_004812.1 | + | 103648 | 0.69 | 0.726228 |
Target: 5'- uACGaGGagGGCGgGCcCCUCGUCGaGGg -3' miRNA: 3'- -UGUaCCagCUGCgCGaGGAGCAGC-CC- -5' |
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21431 | 3' | -57.6 | NC_004812.1 | + | 50145 | 0.69 | 0.735779 |
Target: 5'- cGCGUGGggGGCGCccgGCUCCgucCGcCGGGc -3' miRNA: 3'- -UGUACCagCUGCG---CGAGGa--GCaGCCC- -5' |
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21431 | 3' | -57.6 | NC_004812.1 | + | 103725 | 0.69 | 0.735779 |
Target: 5'- aGCGaGGgaaaCGGCGCGCUCC-CGU-GGGc -3' miRNA: 3'- -UGUaCCa---GCUGCGCGAGGaGCAgCCC- -5' |
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21431 | 3' | -57.6 | NC_004812.1 | + | 24484 | 0.69 | 0.745246 |
Target: 5'- -aGUGG-CGGC-CGCUCCUgGaCGGGg -3' miRNA: 3'- ugUACCaGCUGcGCGAGGAgCaGCCC- -5' |
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21431 | 3' | -57.6 | NC_004812.1 | + | 75134 | 0.69 | 0.754618 |
Target: 5'- ---cGGggGGCGCGUguacgCCgUCGUCGGGg -3' miRNA: 3'- uguaCCagCUGCGCGa----GG-AGCAGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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