miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21431 3' -57.6 NC_004812.1 + 1460 0.68 0.799782
Target:  5'- gGCAcGGcggCGACGCcgGCgUCCUCGgCGGGc -3'
miRNA:   3'- -UGUaCCa--GCUGCG--CG-AGGAGCaGCCC- -5'
21431 3' -57.6 NC_004812.1 + 1808 0.68 0.799782
Target:  5'- aGCAUGGcggacgUCGGgGcCGC-CC-CGUCGGGg -3'
miRNA:   3'- -UGUACC------AGCUgC-GCGaGGaGCAGCCC- -5'
21431 3' -57.6 NC_004812.1 + 1933 0.75 0.386976
Target:  5'- ---cGGcCGGgGCGCUCCgccCGUCGGGg -3'
miRNA:   3'- uguaCCaGCUgCGCGAGGa--GCAGCCC- -5'
21431 3' -57.6 NC_004812.1 + 2808 0.72 0.54896
Target:  5'- gACGUGG-CGGCGCGCgacggcgggCC-CGUCGGc -3'
miRNA:   3'- -UGUACCaGCUGCGCGa--------GGaGCAGCCc -5'
21431 3' -57.6 NC_004812.1 + 3104 0.68 0.78209
Target:  5'- gGCggGGgaggCGcCGCcgaGCUCCUCGcCGGGc -3'
miRNA:   3'- -UGuaCCa---GCuGCG---CGAGGAGCaGCCC- -5'
21431 3' -57.6 NC_004812.1 + 5783 0.73 0.491834
Target:  5'- cGCggGGUCGGCGCcCgCCUCGggcugCGGGg -3'
miRNA:   3'- -UGuaCCAGCUGCGcGaGGAGCa----GCCC- -5'
21431 3' -57.6 NC_004812.1 + 6906 0.67 0.849182
Target:  5'- -gGUGGUCucggGGCGCGCUgCgccCG-CGGGg -3'
miRNA:   3'- ugUACCAG----CUGCGCGAgGa--GCaGCCC- -5'
21431 3' -57.6 NC_004812.1 + 8945 0.69 0.706904
Target:  5'- ---cGGgcaGACGCGCUCC-CcUCGGGa -3'
miRNA:   3'- uguaCCag-CUGCGCGAGGaGcAGCCC- -5'
21431 3' -57.6 NC_004812.1 + 12150 0.66 0.864232
Target:  5'- cGCGcUGGggCGGCGCGC----CGUCGGGg -3'
miRNA:   3'- -UGU-ACCa-GCUGCGCGaggaGCAGCCC- -5'
21431 3' -57.6 NC_004812.1 + 12990 0.7 0.696169
Target:  5'- cCAUGGUCugugacgGGCgGCGCUUgCUCcGUCGGGg -3'
miRNA:   3'- uGUACCAG-------CUG-CGCGAG-GAG-CAGCCC- -5'
21431 3' -57.6 NC_004812.1 + 13705 0.75 0.428905
Target:  5'- ---cGGUCGACgaacugcauGUGCUCCUCGgucagCGGGa -3'
miRNA:   3'- uguaCCAGCUG---------CGCGAGGAGCa----GCCC- -5'
21431 3' -57.6 NC_004812.1 + 15288 0.72 0.568483
Target:  5'- cACGUGGUacACGCGcCUCa-CGUCGGGg -3'
miRNA:   3'- -UGUACCAgcUGCGC-GAGgaGCAGCCC- -5'
21431 3' -57.6 NC_004812.1 + 16516 0.67 0.856803
Target:  5'- cGCggGGgCGAUGCGCUCacgCGU-GGGa -3'
miRNA:   3'- -UGuaCCaGCUGCGCGAGga-GCAgCCC- -5'
21431 3' -57.6 NC_004812.1 + 17507 0.68 0.791003
Target:  5'- gACGUcGcCGACGCGC-CCUCgGUCGcGGc -3'
miRNA:   3'- -UGUAcCaGCUGCGCGaGGAG-CAGC-CC- -5'
21431 3' -57.6 NC_004812.1 + 19695 0.66 0.861284
Target:  5'- gGCccGGUCGGCcucgggcccaacgGCGUacccgucgccccccUCCUCGUcCGGGa -3'
miRNA:   3'- -UGuaCCAGCUG-------------CGCG--------------AGGAGCA-GCCC- -5'
21431 3' -57.6 NC_004812.1 + 19698 0.67 0.825228
Target:  5'- aGCGcGG-CGGCGCGCggcgCCggcgaccggcCGUCGGGc -3'
miRNA:   3'- -UGUaCCaGCUGCGCGa---GGa---------GCAGCCC- -5'
21431 3' -57.6 NC_004812.1 + 20998 0.67 0.849182
Target:  5'- gACGUcGUCGcCGcCGCgCCUCGgccgCGGGg -3'
miRNA:   3'- -UGUAcCAGCuGC-GCGaGGAGCa---GCCC- -5'
21431 3' -57.6 NC_004812.1 + 22527 0.66 0.871464
Target:  5'- cGCGacGUCGGCGCcC-CCgCGUCGGGa -3'
miRNA:   3'- -UGUacCAGCUGCGcGaGGaGCAGCCC- -5'
21431 3' -57.6 NC_004812.1 + 22754 0.67 0.841374
Target:  5'- gGCGUGGUgGACcugGUGCgUCCagGUgGGGg -3'
miRNA:   3'- -UGUACCAgCUG---CGCG-AGGagCAgCCC- -5'
21431 3' -57.6 NC_004812.1 + 23325 0.66 0.878493
Target:  5'- ---aGGgCGAggggUGCGCggggcucaCCUCGUCGGGg -3'
miRNA:   3'- uguaCCaGCU----GCGCGa-------GGAGCAGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.