miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21431 3' -57.6 NC_004812.1 + 24484 0.69 0.745246
Target:  5'- -aGUGG-CGGC-CGCUCCUgGaCGGGg -3'
miRNA:   3'- ugUACCaGCUGcGCGAGGAgCaGCCC- -5'
21431 3' -57.6 NC_004812.1 + 138623 0.7 0.67749
Target:  5'- --cUGGUgGGCGacagGCUCCaCGUCGGGc -3'
miRNA:   3'- uguACCAgCUGCg---CGAGGaGCAGCCC- -5'
21431 3' -57.6 NC_004812.1 + 30380 0.7 0.697148
Target:  5'- gGCcgGGUCGGgGCuCUCCUC--CGGGg -3'
miRNA:   3'- -UGuaCCAGCUgCGcGAGGAGcaGCCC- -5'
21431 3' -57.6 NC_004812.1 + 82874 0.69 0.706904
Target:  5'- -gGUGGUUGAgggcggccgacaCGCGCaccUCCUCG-CGGGu -3'
miRNA:   3'- ugUACCAGCU------------GCGCG---AGGAGCaGCCC- -5'
21431 3' -57.6 NC_004812.1 + 154816 0.69 0.706904
Target:  5'- aGCcgGGgccCGAugcaCGCGCUCC-CGUCGGc -3'
miRNA:   3'- -UGuaCCa--GCU----GCGCGAGGaGCAGCCc -5'
21431 3' -57.6 NC_004812.1 + 145940 0.69 0.715633
Target:  5'- gACGUGGUUGGCgcuGCGCUgggugcggggcacCCUCGggcUGGGg -3'
miRNA:   3'- -UGUACCAGCUG---CGCGA-------------GGAGCa--GCCC- -5'
21431 3' -57.6 NC_004812.1 + 44603 0.69 0.7166
Target:  5'- -gGUGGugcUCGugGCccGCgUCCUCGUgGGGa -3'
miRNA:   3'- ugUACC---AGCugCG--CG-AGGAGCAgCCC- -5'
21431 3' -57.6 NC_004812.1 + 150678 0.69 0.726228
Target:  5'- ---cGGUCGccccCGCGCUCCgggcggCGUCGcGGc -3'
miRNA:   3'- uguaCCAGCu---GCGCGAGGa-----GCAGC-CC- -5'
21431 3' -57.6 NC_004812.1 + 103725 0.69 0.735779
Target:  5'- aGCGaGGgaaaCGGCGCGCUCC-CGU-GGGc -3'
miRNA:   3'- -UGUaCCa---GCUGCGCGAGGaGCAgCCC- -5'
21431 3' -57.6 NC_004812.1 + 90638 0.7 0.657691
Target:  5'- uGC-UGGUUGacgagcgaGCGCGCcaggUCCUCGUCGcGGg -3'
miRNA:   3'- -UGuACCAGC--------UGCGCG----AGGAGCAGC-CC- -5'
21431 3' -57.6 NC_004812.1 + 106231 0.71 0.647759
Target:  5'- -gGUGGUgcACGCGCcCCcggCGUCGGGg -3'
miRNA:   3'- ugUACCAgcUGCGCGaGGa--GCAGCCC- -5'
21431 3' -57.6 NC_004812.1 + 137958 0.71 0.627867
Target:  5'- ---cGGcgCGGCG-GCcCCUCGUCGGGg -3'
miRNA:   3'- uguaCCa-GCUGCgCGaGGAGCAGCCC- -5'
21431 3' -57.6 NC_004812.1 + 150578 0.77 0.297943
Target:  5'- cGCGcGG-CGGCGgGCUCCUCGaCGGGg -3'
miRNA:   3'- -UGUaCCaGCUGCgCGAGGAGCaGCCC- -5'
21431 3' -57.6 NC_004812.1 + 1933 0.75 0.386976
Target:  5'- ---cGGcCGGgGCGCUCCgccCGUCGGGg -3'
miRNA:   3'- uguaCCaGCUgCGCGAGGa--GCAGCCC- -5'
21431 3' -57.6 NC_004812.1 + 13705 0.75 0.428905
Target:  5'- ---cGGUCGACgaacugcauGUGCUCCUCGgucagCGGGa -3'
miRNA:   3'- uguaCCAGCUG---------CGCGAGGAGCa----GCCC- -5'
21431 3' -57.6 NC_004812.1 + 148280 0.73 0.482573
Target:  5'- --cUGG-CGGCuucucgGCGCUCCUCGUCGGc -3'
miRNA:   3'- uguACCaGCUG------CGCGAGGAGCAGCCc -5'
21431 3' -57.6 NC_004812.1 + 5783 0.73 0.491834
Target:  5'- cGCggGGUCGGCGCcCgCCUCGggcugCGGGg -3'
miRNA:   3'- -UGuaCCAGCUGCGcGaGGAGCa----GCCC- -5'
21431 3' -57.6 NC_004812.1 + 128316 0.72 0.54896
Target:  5'- gACGUGG-CGGCGCGCgacggcgggCC-CGUCGGc -3'
miRNA:   3'- -UGUACCaGCUGCGCGa--------GGaGCAGCCc -5'
21431 3' -57.6 NC_004812.1 + 91126 0.72 0.54896
Target:  5'- cCGUGGUCcGCGCGCg-CUCGgccCGGGg -3'
miRNA:   3'- uGUACCAGcUGCGCGagGAGCa--GCCC- -5'
21431 3' -57.6 NC_004812.1 + 95129 0.71 0.607987
Target:  5'- ---cGGUCGGgacCGCGgUCCUCGUuccgCGGGg -3'
miRNA:   3'- uguaCCAGCU---GCGCgAGGAGCA----GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.