miRNA display CGI


Results 21 - 40 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 27751 0.66 0.910042
Target:  5'- ---aGCGGGCCGCCcgcggcccgcaggGGCGGGCGgcccaGCc -3'
miRNA:   3'- aaacUGCUCGGCGG-------------CUGCCUGUag---CG- -5'
21439 5' -56 NC_004812.1 + 73952 0.66 0.910642
Target:  5'- --cGAaGAGCCggaaGCCGucgcccUGGGCGUCGCu -3'
miRNA:   3'- aaaCUgCUCGG----CGGCu-----GCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 153104 0.66 0.910642
Target:  5'- -----gGGGCCGCCGGCcccGGGCccgCGCc -3'
miRNA:   3'- aaacugCUCGGCGGCUG---CCUGua-GCG- -5'
21439 5' -56 NC_004812.1 + 142386 0.66 0.92214
Target:  5'- --cGGCGcgccguGGCCGCCGG-GGGCGggGCc -3'
miRNA:   3'- aaaCUGC------UCGGCGGCUgCCUGUagCG- -5'
21439 5' -56 NC_004812.1 + 56536 0.66 0.891641
Target:  5'- --cGACGAGCC-CCGACcccACcgCGCc -3'
miRNA:   3'- aaaCUGCUCGGcGGCUGcc-UGuaGCG- -5'
21439 5' -56 NC_004812.1 + 12386 0.66 0.90454
Target:  5'- -aUGGCGAGCaucgagcugaUGCCGuaguCGGcguuCGUCGCc -3'
miRNA:   3'- aaACUGCUCG----------GCGGCu---GCCu---GUAGCG- -5'
21439 5' -56 NC_004812.1 + 113511 0.66 0.90454
Target:  5'- --cGugGAgGCCGUggccuCGGCGGACGagaCGCu -3'
miRNA:   3'- aaaCugCU-CGGCG-----GCUGCCUGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 23483 0.66 0.910642
Target:  5'- -cUGGCG-GUgGUCGAgGGGCugcuGUCGCa -3'
miRNA:   3'- aaACUGCuCGgCGGCUgCCUG----UAGCG- -5'
21439 5' -56 NC_004812.1 + 125705 0.66 0.90454
Target:  5'- ---cGCGcGCCGCCGGgggaGGGCccggGUCGCg -3'
miRNA:   3'- aaacUGCuCGGCGGCUg---CCUG----UAGCG- -5'
21439 5' -56 NC_004812.1 + 41635 0.66 0.898206
Target:  5'- -cUGACGucAG-CGCCGAgGccGACGUCGCc -3'
miRNA:   3'- aaACUGC--UCgGCGGCUgC--CUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 131168 0.66 0.90454
Target:  5'- ---cGCGu-CCGCCGGgGGGCGUCGg -3'
miRNA:   3'- aaacUGCucGGCGGCUgCCUGUAGCg -5'
21439 5' -56 NC_004812.1 + 48651 0.66 0.891641
Target:  5'- --gGGCG-GCUGUaCGugGGcCAUCGCc -3'
miRNA:   3'- aaaCUGCuCGGCG-GCugCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 138712 0.66 0.898206
Target:  5'- --gGACGAccGCgGCgCGGCGGGCc-CGCg -3'
miRNA:   3'- aaaCUGCU--CGgCG-GCUGCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 140857 0.66 0.90454
Target:  5'- --cGACGuGCCGCaGGCGcGCAaggCGCg -3'
miRNA:   3'- aaaCUGCuCGGCGgCUGCcUGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 84637 0.66 0.898206
Target:  5'- -cUGGCGAcGCCGCgccaGACGGcCAccaCGCu -3'
miRNA:   3'- aaACUGCU-CGGCGg---CUGCCuGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 112894 0.66 0.910642
Target:  5'- --cGGCGAGacgaCGgCGACGGAgCGcccUCGCc -3'
miRNA:   3'- aaaCUGCUCg---GCgGCUGCCU-GU---AGCG- -5'
21439 5' -56 NC_004812.1 + 142065 0.66 0.898206
Target:  5'- --cGACGAGcCCGCCcccGCGG---UCGCg -3'
miRNA:   3'- aaaCUGCUC-GGCGGc--UGCCuguAGCG- -5'
21439 5' -56 NC_004812.1 + 103279 0.66 0.910642
Target:  5'- --cGACG-GCCGCCccccgcacgcuGACGGuGCcgUGCa -3'
miRNA:   3'- aaaCUGCuCGGCGG-----------CUGCC-UGuaGCG- -5'
21439 5' -56 NC_004812.1 + 90643 0.66 0.891641
Target:  5'- gUUGACGAGCgagcgCGCCa--GGuccuCGUCGCg -3'
miRNA:   3'- aAACUGCUCG-----GCGGcugCCu---GUAGCG- -5'
21439 5' -56 NC_004812.1 + 123757 0.66 0.891641
Target:  5'- -gUGACGAugcacCCGuccccCCGACGGGCGgagCGCc -3'
miRNA:   3'- aaACUGCUc----GGC-----GGCUGCCUGUa--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.