miRNA display CGI


Results 1 - 20 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 41635 0.66 0.898206
Target:  5'- -cUGACGucAG-CGCCGAgGccGACGUCGCc -3'
miRNA:   3'- aaACUGC--UCgGCGGCUgC--CUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 152271 0.66 0.891641
Target:  5'- ---cAUGAGCCGCCGcuACG-ACcgCGCg -3'
miRNA:   3'- aaacUGCUCGGCGGC--UGCcUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 9768 0.66 0.891641
Target:  5'- ---cGCG-GCgCGCCGGCGG-CcgCGCg -3'
miRNA:   3'- aaacUGCuCG-GCGGCUGCCuGuaGCG- -5'
21439 5' -56 NC_004812.1 + 90643 0.66 0.891641
Target:  5'- gUUGACGAGCgagcgCGCCa--GGuccuCGUCGCg -3'
miRNA:   3'- aAACUGCUCG-----GCGGcugCCu---GUAGCG- -5'
21439 5' -56 NC_004812.1 + 125656 0.66 0.891641
Target:  5'- -gUGGCGccgcGCCGCCGcgcccGCGGcccGCcgCGCg -3'
miRNA:   3'- aaACUGCu---CGGCGGC-----UGCC---UGuaGCG- -5'
21439 5' -56 NC_004812.1 + 79164 0.66 0.891641
Target:  5'- --gGugGuGUCgGCCGGCGGACAggucuUCGa -3'
miRNA:   3'- aaaCugCuCGG-CGGCUGCCUGU-----AGCg -5'
21439 5' -56 NC_004812.1 + 138712 0.66 0.898206
Target:  5'- --gGACGAccGCgGCgCGGCGGGCc-CGCg -3'
miRNA:   3'- aaaCUGCU--CGgCG-GCUGCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 25898 0.66 0.903292
Target:  5'- --cGGCGcccgcgcccagcGCCGCgGGCGcGCGUCGCg -3'
miRNA:   3'- aaaCUGCu-----------CGGCGgCUGCcUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 100830 0.66 0.89756
Target:  5'- -cUGACGAccgcgggGCUGCCcAgGGGCAgggCGCg -3'
miRNA:   3'- aaACUGCU-------CGGCGGcUgCCUGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 6202 0.66 0.898206
Target:  5'- --gGGCGcccGGCgGCCcGCGGACGcCGCc -3'
miRNA:   3'- aaaCUGC---UCGgCGGcUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 123757 0.66 0.891641
Target:  5'- -gUGACGAugcacCCGuccccCCGACGGGCGgagCGCc -3'
miRNA:   3'- aaACUGCUc----GGC-----GGCUGCCUGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 106715 0.66 0.891641
Target:  5'- -cUGcGCGuGCUGCUGGCGGGCGaggGCg -3'
miRNA:   3'- aaAC-UGCuCGGCGGCUGCCUGUag-CG- -5'
21439 5' -56 NC_004812.1 + 48651 0.66 0.891641
Target:  5'- --gGGCG-GCUGUaCGugGGcCAUCGCc -3'
miRNA:   3'- aaaCUGCuCGGCG-GCugCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 75448 0.66 0.90454
Target:  5'- --cGGcCGGGUCGCCGcggagGCGGACGgucUGCu -3'
miRNA:   3'- aaaCU-GCUCGGCGGC-----UGCCUGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 84637 0.66 0.898206
Target:  5'- -cUGGCGAcGCCGCgccaGACGGcCAccaCGCu -3'
miRNA:   3'- aaACUGCU-CGGCGg---CUGCCuGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 46793 0.66 0.891641
Target:  5'- --cGGuCGAGCCGgUGcUGGGCAUCGa -3'
miRNA:   3'- aaaCU-GCUCGGCgGCuGCCUGUAGCg -5'
21439 5' -56 NC_004812.1 + 142386 0.66 0.92214
Target:  5'- --cGGCGcgccguGGCCGCCGG-GGGCGggGCc -3'
miRNA:   3'- aaaCUGC------UCGGCGGCUgCCUGUagCG- -5'
21439 5' -56 NC_004812.1 + 8490 0.66 0.898206
Target:  5'- --aGAuCGAGCgGCCGGCGGc---CGCc -3'
miRNA:   3'- aaaCU-GCUCGgCGGCUGCCuguaGCG- -5'
21439 5' -56 NC_004812.1 + 68575 0.66 0.90454
Target:  5'- --gGACGGGaCCGCgGG-GGACGcCGCc -3'
miRNA:   3'- aaaCUGCUC-GGCGgCUgCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 142065 0.66 0.898206
Target:  5'- --cGACGAGcCCGCCcccGCGG---UCGCg -3'
miRNA:   3'- aaaCUGCUC-GGCGGc--UGCCuguAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.