miRNA display CGI


Results 1 - 20 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 96441 1.08 0.003466
Target:  5'- cUUUGACGAGCCGCCGACGGACAUCGCc -3'
miRNA:   3'- -AAACUGCUCGGCGGCUGCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 100961 0.79 0.260472
Target:  5'- --gGGCGcGCCGCCG-CGGACGUcCGCg -3'
miRNA:   3'- aaaCUGCuCGGCGGCuGCCUGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 30946 0.78 0.292928
Target:  5'- --cGGCGGGCCGCgGGCGcGGCggCGCg -3'
miRNA:   3'- aaaCUGCUCGGCGgCUGC-CUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 124123 0.78 0.292928
Target:  5'- ---cGCGGuacGCCGCCGACGGGCcgCGCc -3'
miRNA:   3'- aaacUGCU---CGGCGGCUGCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 45 0.78 0.292928
Target:  5'- --cGGCGGGCCGCgGGCGcGGCggCGCg -3'
miRNA:   3'- aaaCUGCUCGGCGgCUGC-CUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 156455 0.78 0.292928
Target:  5'- --cGGCGGGCCGCgGGCGcGGCggCGCg -3'
miRNA:   3'- aaaCUGCUCGGCGgCUGC-CUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 73905 0.78 0.306768
Target:  5'- --gGGCGAGCCGCCGuCGGcCggCGCc -3'
miRNA:   3'- aaaCUGCUCGGCGGCuGCCuGuaGCG- -5'
21439 5' -56 NC_004812.1 + 105212 0.78 0.313874
Target:  5'- --gGGCGAGCgCGCCGGCGGcCggCGCc -3'
miRNA:   3'- aaaCUGCUCG-GCGGCUGCCuGuaGCG- -5'
21439 5' -56 NC_004812.1 + 107546 0.78 0.328457
Target:  5'- --cGACGAGCaCGUCGGCGGACuugucCGCc -3'
miRNA:   3'- aaaCUGCUCG-GCGGCUGCCUGua---GCG- -5'
21439 5' -56 NC_004812.1 + 113031 0.78 0.328457
Target:  5'- --gGGCGGGCgCGCCgGACGGACGgcCGCg -3'
miRNA:   3'- aaaCUGCUCG-GCGG-CUGCCUGUa-GCG- -5'
21439 5' -56 NC_004812.1 + 39041 0.77 0.335935
Target:  5'- -gUGACGAgcacGCCGUCGACGGGCcgccCGCg -3'
miRNA:   3'- aaACUGCU----CGGCGGCUGCCUGua--GCG- -5'
21439 5' -56 NC_004812.1 + 55854 0.77 0.335935
Target:  5'- gUUGACGAGgCGCCGcagcAgGGGCGUCGUc -3'
miRNA:   3'- aAACUGCUCgGCGGC----UgCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 100339 0.77 0.351259
Target:  5'- ---aGCGGGCCGCCG-CGGGCGaggCGCa -3'
miRNA:   3'- aaacUGCUCGGCGGCuGCCUGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 104288 0.76 0.375162
Target:  5'- --cGACGGGCCgucGCCGGCGGGCGaCGg -3'
miRNA:   3'- aaaCUGCUCGG---CGGCUGCCUGUaGCg -5'
21439 5' -56 NC_004812.1 + 140093 0.76 0.391697
Target:  5'- -gUGAUGAGCgCGCCcauGGCGGGCG-CGCg -3'
miRNA:   3'- aaACUGCUCG-GCGG---CUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 53248 0.76 0.391697
Target:  5'- gUUGACGuGCCGCUGGauGugGUCGUa -3'
miRNA:   3'- aAACUGCuCGGCGGCUgcCugUAGCG- -5'
21439 5' -56 NC_004812.1 + 4961 0.76 0.417373
Target:  5'- --cGGCGGGCgGCCGGCGGcgGCGagGCg -3'
miRNA:   3'- aaaCUGCUCGgCGGCUGCC--UGUagCG- -5'
21439 5' -56 NC_004812.1 + 130469 0.76 0.417373
Target:  5'- --cGGCGGGCgGCCGGCGGcgGCGagGCg -3'
miRNA:   3'- aaaCUGCUCGgCGGCUGCC--UGUagCG- -5'
21439 5' -56 NC_004812.1 + 15127 0.76 0.417373
Target:  5'- --cGGCGGcGCCcCCGACGGcgACGUCGCa -3'
miRNA:   3'- aaaCUGCU-CGGcGGCUGCC--UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 59663 0.76 0.417373
Target:  5'- --gGACGGGCCGgCG-CGGGCGcCGCg -3'
miRNA:   3'- aaaCUGCUCGGCgGCuGCCUGUaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.