miRNA display CGI


Results 1 - 20 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 45 0.78 0.292928
Target:  5'- --cGGCGGGCCGCgGGCGcGGCggCGCg -3'
miRNA:   3'- aaaCUGCUCGGCGgCUGC-CUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 147 0.66 0.891641
Target:  5'- -gUGGCGccgcGCCGCCGcgcccGCGGcccGCcgCGCg -3'
miRNA:   3'- aaACUGCu---CGGCGGC-----UGCC---UGuaGCG- -5'
21439 5' -56 NC_004812.1 + 196 0.66 0.90454
Target:  5'- ---cGCGcGCCGCCGGgggaGGGCccggGUCGCg -3'
miRNA:   3'- aaacUGCuCGGCGGCUg---CCUG----UAGCG- -5'
21439 5' -56 NC_004812.1 + 456 0.7 0.720909
Target:  5'- --cGAgccCGGGCCGCCGGCGcGccuGCGUgCGCa -3'
miRNA:   3'- aaaCU---GCUCGGCGGCUGC-C---UGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 579 0.72 0.619827
Target:  5'- --cGugGAGCCGCgGGCGcGGCuccgguagCGCg -3'
miRNA:   3'- aaaCugCUCGGCGgCUGC-CUGua------GCG- -5'
21439 5' -56 NC_004812.1 + 728 0.7 0.720909
Target:  5'- --cGGCGcGGUCGCCGGCGGGgGUgggggcggCGCg -3'
miRNA:   3'- aaaCUGC-UCGGCGGCUGCCUgUA--------GCG- -5'
21439 5' -56 NC_004812.1 + 1303 0.69 0.769161
Target:  5'- --aGGCGGGgCGCCGAccccCGGGCccCGCc -3'
miRNA:   3'- aaaCUGCUCgGCGGCU----GCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 1994 0.73 0.569112
Target:  5'- -gUGGCGGGucCCGCCGGCGG---UCGCu -3'
miRNA:   3'- aaACUGCUC--GGCGGCUGCCuguAGCG- -5'
21439 5' -56 NC_004812.1 + 2033 0.68 0.822971
Target:  5'- --cGGCGGGCCucgGUCGGCGG-CGgggggCGCg -3'
miRNA:   3'- aaaCUGCUCGG---CGGCUGCCuGUa----GCG- -5'
21439 5' -56 NC_004812.1 + 2402 0.67 0.855514
Target:  5'- --aGACGGGCCGCagCGGCGcGGCcagcccccagCGCg -3'
miRNA:   3'- aaaCUGCUCGGCG--GCUGC-CUGua--------GCG- -5'
21439 5' -56 NC_004812.1 + 2477 0.67 0.884851
Target:  5'- ----cCGGGgCGCCGGCGGcgGCGgccUCGCg -3'
miRNA:   3'- aaacuGCUCgGCGGCUGCC--UGU---AGCG- -5'
21439 5' -56 NC_004812.1 + 2519 0.71 0.660604
Target:  5'- --cGGCGcGGCCGUCGagcGCGGGCAgcacggCGCg -3'
miRNA:   3'- aaaCUGC-UCGGCGGC---UGCCUGUa-----GCG- -5'
21439 5' -56 NC_004812.1 + 2551 0.67 0.855514
Target:  5'- --cGACGAcGCCGCCGcCGu-CGUCGa -3'
miRNA:   3'- aaaCUGCU-CGGCGGCuGCcuGUAGCg -5'
21439 5' -56 NC_004812.1 + 2590 0.69 0.787677
Target:  5'- --cGACGccgccGCCGCCGACGG-CAcCGg -3'
miRNA:   3'- aaaCUGCu----CGGCGGCUGCCuGUaGCg -5'
21439 5' -56 NC_004812.1 + 2753 0.72 0.589313
Target:  5'- --cGGCGGGCCa---GCGGACGUCGCa -3'
miRNA:   3'- aaaCUGCUCGGcggcUGCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 3103 0.69 0.777558
Target:  5'- --gGGCGGgggaggcGCCGCCGAgcuccucgcCGGGCAgcggCGCg -3'
miRNA:   3'- aaaCUGCU-------CGGCGGCU---------GCCUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 3230 0.66 0.894295
Target:  5'- --cGGCGGGCCgaaggcgcggccggaGCCGGgcuCGGGCGggcCGCa -3'
miRNA:   3'- aaaCUGCUCGG---------------CGGCU---GCCUGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 3441 0.74 0.503956
Target:  5'- --cGGCGccAGCCGCCGcgggggucgggcccgGCGGGCgGUCGCg -3'
miRNA:   3'- aaaCUGC--UCGGCGGC---------------UGCCUG-UAGCG- -5'
21439 5' -56 NC_004812.1 + 3493 0.66 0.92214
Target:  5'- --cGGCGGGCCGCgGgcGCGGGCccGggGCc -3'
miRNA:   3'- aaaCUGCUCGGCGgC--UGCCUG--UagCG- -5'
21439 5' -56 NC_004812.1 + 3572 0.68 0.814386
Target:  5'- --cGGCGGGCaggcggcggCGgCGGCGGGCGggCGCg -3'
miRNA:   3'- aaaCUGCUCG---------GCgGCUGCCUGUa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.