miRNA display CGI


Results 1 - 20 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 47607 0.73 0.529288
Target:  5'- --cGAcccCGAGCgCGCCGACGGGC-UCGg -3'
miRNA:   3'- aaaCU---GCUCG-GCGGCUGCCUGuAGCg -5'
21439 5' -56 NC_004812.1 + 80101 0.75 0.468855
Target:  5'- --aGGC-AGCCGUCGACGGccucggccgacagaGCGUCGCg -3'
miRNA:   3'- aaaCUGcUCGGCGGCUGCC--------------UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 151288 0.74 0.48105
Target:  5'- --gGGCGGcGCC-CCGGCGGACGaCGCg -3'
miRNA:   3'- aaaCUGCU-CGGcGGCUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 77351 0.74 0.490534
Target:  5'- --cGACGAGCCccugGCCcGCGG-CGUCGCc -3'
miRNA:   3'- aaaCUGCUCGG----CGGcUGCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 42583 0.74 0.497225
Target:  5'- --cGACGcGCgCGCCGACGGcgagaccgugcugcGCAUCGUa -3'
miRNA:   3'- aaaCUGCuCG-GCGGCUGCC--------------UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 18080 0.74 0.500105
Target:  5'- --aGAcCGAGCCGCCGucCGGGCcgcCGCa -3'
miRNA:   3'- aaaCU-GCUCGGCGGCu-GCCUGua-GCG- -5'
21439 5' -56 NC_004812.1 + 128949 0.74 0.503956
Target:  5'- --cGGCGccAGCCGCCGcgggggucgggcccgGCGGGCgGUCGCg -3'
miRNA:   3'- aaaCUGC--UCGGCGGC---------------UGCCUG-UAGCG- -5'
21439 5' -56 NC_004812.1 + 30691 0.74 0.508788
Target:  5'- --gGACGAGCCGCCacacgaaGAUGGAguUgGCg -3'
miRNA:   3'- aaaCUGCUCGGCGG-------CUGCCUguAgCG- -5'
21439 5' -56 NC_004812.1 + 32601 0.74 0.519486
Target:  5'- -gUGuACGGGUcguaggCGCCG-CGGGCGUCGCa -3'
miRNA:   3'- aaAC-UGCUCG------GCGGCuGCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 136858 0.75 0.453151
Target:  5'- --cGACGAcGCCcCCGACG-ACGUCGCg -3'
miRNA:   3'- aaaCUGCU-CGGcGGCUGCcUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 156135 0.75 0.444048
Target:  5'- -gUGACGGGCCGC--GCGGACGcggggCGCg -3'
miRNA:   3'- aaACUGCUCGGCGgcUGCCUGUa----GCG- -5'
21439 5' -56 NC_004812.1 + 39531 0.75 0.426156
Target:  5'- --gGAUGGGCUGCuCGACGGGgugcgggcCGUCGCg -3'
miRNA:   3'- aaaCUGCUCGGCG-GCUGCCU--------GUAGCG- -5'
21439 5' -56 NC_004812.1 + 156455 0.78 0.292928
Target:  5'- --cGGCGGGCCGCgGGCGcGGCggCGCg -3'
miRNA:   3'- aaaCUGCUCGGCGgCUGC-CUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 107546 0.78 0.328457
Target:  5'- --cGACGAGCaCGUCGGCGGACuugucCGCc -3'
miRNA:   3'- aaaCUGCUCG-GCGGCUGCCUGua---GCG- -5'
21439 5' -56 NC_004812.1 + 113031 0.78 0.328457
Target:  5'- --gGGCGGGCgCGCCgGACGGACGgcCGCg -3'
miRNA:   3'- aaaCUGCUCG-GCGG-CUGCCUGUa-GCG- -5'
21439 5' -56 NC_004812.1 + 55854 0.77 0.335935
Target:  5'- gUUGACGAGgCGCCGcagcAgGGGCGUCGUc -3'
miRNA:   3'- aAACUGCUCgGCGGC----UgCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 39041 0.77 0.335935
Target:  5'- -gUGACGAgcacGCCGUCGACGGGCcgccCGCg -3'
miRNA:   3'- aaACUGCU----CGGCGGCUGCCUGua--GCG- -5'
21439 5' -56 NC_004812.1 + 53248 0.76 0.391697
Target:  5'- gUUGACGuGCCGCUGGauGugGUCGUa -3'
miRNA:   3'- aAACUGCuCGGCGGCUgcCugUAGCG- -5'
21439 5' -56 NC_004812.1 + 15127 0.76 0.417373
Target:  5'- --cGGCGGcGCCcCCGACGGcgACGUCGCa -3'
miRNA:   3'- aaaCUGCU-CGGcGGCUGCC--UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 130469 0.76 0.417373
Target:  5'- --cGGCGGGCgGCCGGCGGcgGCGagGCg -3'
miRNA:   3'- aaaCUGCUCGgCGGCUGCC--UGUagCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.