miRNA display CGI


Results 41 - 60 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 18488 0.66 0.916509
Target:  5'- --gGACGAGggGCgGAgGGGCGUCGa -3'
miRNA:   3'- aaaCUGCUCggCGgCUgCCUGUAGCg -5'
21439 5' -56 NC_004812.1 + 10714 0.66 0.914774
Target:  5'- --aGGCG-GCCGCCGuucccuccacgcucGCGGuCcUCGCc -3'
miRNA:   3'- aaaCUGCuCGGCGGC--------------UGCCuGuAGCG- -5'
21439 5' -56 NC_004812.1 + 116756 0.66 0.913017
Target:  5'- -aUGGCgGAGCCccggccccccgcaccGCCuACGGGCA-CGCg -3'
miRNA:   3'- aaACUG-CUCGG---------------CGGcUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 103279 0.66 0.910642
Target:  5'- --cGACG-GCCGCCccccgcacgcuGACGGuGCcgUGCa -3'
miRNA:   3'- aaaCUGCuCGGCGG-----------CUGCC-UGuaGCG- -5'
21439 5' -56 NC_004812.1 + 151866 0.66 0.910642
Target:  5'- --cGcCGAGCCGCCGccccCGGGg--CGCg -3'
miRNA:   3'- aaaCuGCUCGGCGGCu---GCCUguaGCG- -5'
21439 5' -56 NC_004812.1 + 129556 0.66 0.910642
Target:  5'- --cGGCG-GCgGCCG-CGG-CGUCGUc -3'
miRNA:   3'- aaaCUGCuCGgCGGCuGCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 115270 0.66 0.910642
Target:  5'- --gGACucgaGGCCGUCGugGG-CGUCGa -3'
miRNA:   3'- aaaCUGc---UCGGCGGCugCCuGUAGCg -5'
21439 5' -56 NC_004812.1 + 112894 0.66 0.910642
Target:  5'- --cGGCGAGacgaCGgCGACGGAgCGcccUCGCc -3'
miRNA:   3'- aaaCUGCUCg---GCgGCUGCCU-GU---AGCG- -5'
21439 5' -56 NC_004812.1 + 153104 0.66 0.910642
Target:  5'- -----gGGGCCGCCGGCcccGGGCccgCGCc -3'
miRNA:   3'- aaacugCUCGGCGGCUG---CCUGua-GCG- -5'
21439 5' -56 NC_004812.1 + 76742 0.66 0.910642
Target:  5'- ---aGCGcGGCCGCCGuguCGGcCGUCGg -3'
miRNA:   3'- aaacUGC-UCGGCGGCu--GCCuGUAGCg -5'
21439 5' -56 NC_004812.1 + 73952 0.66 0.910642
Target:  5'- --cGAaGAGCCggaaGCCGucgcccUGGGCGUCGCu -3'
miRNA:   3'- aaaCUgCUCGG----CGGCu-----GCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 23483 0.66 0.910642
Target:  5'- -cUGGCG-GUgGUCGAgGGGCugcuGUCGCa -3'
miRNA:   3'- aaACUGCuCGgCGGCUgCCUG----UAGCG- -5'
21439 5' -56 NC_004812.1 + 125976 0.66 0.910642
Target:  5'- -gUGACG-GCC-CUGACGGGgG-CGCu -3'
miRNA:   3'- aaACUGCuCGGcGGCUGCCUgUaGCG- -5'
21439 5' -56 NC_004812.1 + 51747 0.66 0.910642
Target:  5'- --cGACGAccgccgcgGCCGCCGGCGcGGCcaagaGCc -3'
miRNA:   3'- aaaCUGCU--------CGGCGGCUGC-CUGuag--CG- -5'
21439 5' -56 NC_004812.1 + 27596 0.66 0.910642
Target:  5'- -----gGGGCCGCCGGCcccGGGCccgCGCc -3'
miRNA:   3'- aaacugCUCGGCGGCUG---CCUGua-GCG- -5'
21439 5' -56 NC_004812.1 + 141482 0.66 0.910642
Target:  5'- --cGACGucGCCGUCGG-GGGCGcCGCc -3'
miRNA:   3'- aaaCUGCu-CGGCGGCUgCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 26358 0.66 0.910642
Target:  5'- --cGcCGAGCCGCCGccccCGGGg--CGCg -3'
miRNA:   3'- aaaCuGCUCGGCGGCu---GCCUguaGCG- -5'
21439 5' -56 NC_004812.1 + 43522 0.66 0.910642
Target:  5'- --cGugGGuCCGCCGcgGCGG-UGUCGCg -3'
miRNA:   3'- aaaCugCUcGGCGGC--UGCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 116438 0.66 0.910642
Target:  5'- --gGACG-GCCuGCgGgGCGGcCGUCGCg -3'
miRNA:   3'- aaaCUGCuCGG-CGgC-UGCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 95560 0.66 0.910642
Target:  5'- --cGGCGA--CGCCGACGuGGCGgucUCGCc -3'
miRNA:   3'- aaaCUGCUcgGCGGCUGC-CUGU---AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.