miRNA display CGI


Results 21 - 40 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 3608 0.73 0.553076
Target:  5'- --cGGCGAggagcucuugcgcuuGCgCGCCGGCGGGCG-CGCg -3'
miRNA:   3'- aaaCUGCU---------------CG-GCGGCUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 3712 0.69 0.759717
Target:  5'- --cGGCGGcGgCGCCGGCGGAg--CGCa -3'
miRNA:   3'- aaaCUGCU-CgGCGGCUGCCUguaGCG- -5'
21439 5' -56 NC_004812.1 + 3766 0.67 0.877838
Target:  5'- --cGGCGGcGCCGgCGACGaGGCugacggCGCg -3'
miRNA:   3'- aaaCUGCU-CGGCgGCUGC-CUGua----GCG- -5'
21439 5' -56 NC_004812.1 + 3922 0.7 0.701014
Target:  5'- --cGGCgGGGCCGCgCGGCGGcgGCAcggCGCg -3'
miRNA:   3'- aaaCUG-CUCGGCG-GCUGCC--UGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 4047 0.66 0.910642
Target:  5'- --cGGCG-GCgGCCG-CGG-CGUCGUc -3'
miRNA:   3'- aaaCUGCuCGgCGGCuGCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 4146 0.68 0.831384
Target:  5'- --gGGCG-GCCGCCaGGCGG-CGcugCGCg -3'
miRNA:   3'- aaaCUGCuCGGCGG-CUGCCuGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 4395 0.68 0.839617
Target:  5'- --aGcCGaAGCgGCCGGCGGcCAUgGCg -3'
miRNA:   3'- aaaCuGC-UCGgCGGCUGCCuGUAgCG- -5'
21439 5' -56 NC_004812.1 + 4508 0.69 0.795832
Target:  5'- --cGGuCGAGCuccacguCGCCGGCGGugAcgCGCg -3'
miRNA:   3'- aaaCU-GCUCG-------GCGGCUGCCugUa-GCG- -5'
21439 5' -56 NC_004812.1 + 4645 0.7 0.720909
Target:  5'- ---cGCGGGCgCGCCGGCGG-CcUCGUa -3'
miRNA:   3'- aaacUGCUCG-GCGGCUGCCuGuAGCG- -5'
21439 5' -56 NC_004812.1 + 4777 0.68 0.839617
Target:  5'- --cGGCucGCCGCUGGCGuaccCGUCGCg -3'
miRNA:   3'- aaaCUGcuCGGCGGCUGCcu--GUAGCG- -5'
21439 5' -56 NC_004812.1 + 4858 0.67 0.870607
Target:  5'- --cGGCGGcGCgGCCGugaaGCGGcccgugGCGUCGCg -3'
miRNA:   3'- aaaCUGCU-CGgCGGC----UGCC------UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 4961 0.76 0.417373
Target:  5'- --cGGCGGGCgGCCGGCGGcgGCGagGCg -3'
miRNA:   3'- aaaCUGCUCGgCGGCUGCC--UGUagCG- -5'
21439 5' -56 NC_004812.1 + 5586 0.68 0.802981
Target:  5'- --cGGCGGcCCGUCGGCGGgguccugcgaggccGCGUCGUa -3'
miRNA:   3'- aaaCUGCUcGGCGGCUGCC--------------UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 5660 0.66 0.90454
Target:  5'- ---cGCGu-CCGCCGGgGGGCGUCGg -3'
miRNA:   3'- aaacUGCucGGCGGCUgCCUGUAGCg -5'
21439 5' -56 NC_004812.1 + 5825 0.68 0.805636
Target:  5'- --cGGCGGGCUcugcggGCCGGCGG-CG-CGCu -3'
miRNA:   3'- aaaCUGCUCGG------CGGCUGCCuGUaGCG- -5'
21439 5' -56 NC_004812.1 + 5965 0.67 0.877838
Target:  5'- --cGGgGAgGCCGCgGGgGGGCgaGUCGCg -3'
miRNA:   3'- aaaCUgCU-CGGCGgCUgCCUG--UAGCG- -5'
21439 5' -56 NC_004812.1 + 6124 0.7 0.750161
Target:  5'- --cGGCGGGCUGCCGgggaagGCGGGCGagGg -3'
miRNA:   3'- aaaCUGCUCGGCGGC------UGCCUGUagCg -5'
21439 5' -56 NC_004812.1 + 6202 0.66 0.898206
Target:  5'- --gGGCGcccGGCgGCCcGCGGACGcCGCc -3'
miRNA:   3'- aaaCUGC---UCGgCGGcUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 6559 0.7 0.710995
Target:  5'- ---cGCGAGUCGCuuaggcaagaaCGGCGGGCGUCuGCg -3'
miRNA:   3'- aaacUGCUCGGCG-----------GCUGCCUGUAG-CG- -5'
21439 5' -56 NC_004812.1 + 6789 0.7 0.720909
Target:  5'- --gGGCGAGCCGUgccuCGGgGGGCG-CGCc -3'
miRNA:   3'- aaaCUGCUCGGCG----GCUgCCUGUaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.