Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21444 | 3' | -53.6 | NC_004812.1 | + | 35478 | 0.66 | 0.978965 |
Target: 5'- gCGUCGgcgCGCGaGAUCcccgaGGGGaUCGCg -3' miRNA: 3'- -GCAGCa--GUGCaCUAGuag--CCCC-AGUG- -5' |
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21444 | 3' | -53.6 | NC_004812.1 | + | 105499 | 0.66 | 0.978965 |
Target: 5'- gCGUCGUCcCG--GUCGUCGuaGUCACa -3' miRNA: 3'- -GCAGCAGuGCacUAGUAGCccCAGUG- -5' |
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21444 | 3' | -53.6 | NC_004812.1 | + | 111382 | 0.66 | 0.97661 |
Target: 5'- --gUGUCGCgGUGAcgUCAUCGGcGGgCACg -3' miRNA: 3'- gcaGCAGUG-CACU--AGUAGCC-CCaGUG- -5' |
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21444 | 3' | -53.6 | NC_004812.1 | + | 72010 | 0.66 | 0.971328 |
Target: 5'- gGUCGUCuCGcGGUCGcUCGGGGg--- -3' miRNA: 3'- gCAGCAGuGCaCUAGU-AGCCCCagug -5' |
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21444 | 3' | -53.6 | NC_004812.1 | + | 71807 | 0.66 | 0.971328 |
Target: 5'- cCGUCGUgGCGUGGggGUUGGcGGUa-- -3' miRNA: 3'- -GCAGCAgUGCACUagUAGCC-CCAgug -5' |
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21444 | 3' | -53.6 | NC_004812.1 | + | 104084 | 0.66 | 0.971328 |
Target: 5'- gGUCGUCAUG-GG-CAUCGuGGGggGCg -3' miRNA: 3'- gCAGCAGUGCaCUaGUAGC-CCCagUG- -5' |
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21444 | 3' | -53.6 | NC_004812.1 | + | 15902 | 0.66 | 0.969588 |
Target: 5'- uGUCGgaccggaagaCACGgcgggcggggguggGGUCG-CGGGGUCACg -3' miRNA: 3'- gCAGCa---------GUGCa-------------CUAGUaGCCCCAGUG- -5' |
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21444 | 3' | -53.6 | NC_004812.1 | + | 130477 | 0.66 | 0.968388 |
Target: 5'- cCGUCGagCcCG-GGUgGUCGGcGGUCGCg -3' miRNA: 3'- -GCAGCa-GuGCaCUAgUAGCC-CCAGUG- -5' |
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21444 | 3' | -53.6 | NC_004812.1 | + | 145156 | 0.66 | 0.964913 |
Target: 5'- gCGUCGUguacgucaacgggCACGUGcacgccUGGGGUCACg -3' miRNA: 3'- -GCAGCA-------------GUGCACuagua-GCCCCAGUG- -5' |
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21444 | 3' | -53.6 | NC_004812.1 | + | 140341 | 0.67 | 0.961877 |
Target: 5'- uCGUCGUCggcGCGUGGguggCcgCGGcGGUgACc -3' miRNA: 3'- -GCAGCAG---UGCACUa---GuaGCC-CCAgUG- -5' |
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21444 | 3' | -53.6 | NC_004812.1 | + | 91177 | 0.67 | 0.961877 |
Target: 5'- aCGUCGUCcacgcucgccuGCGUG-UUGUUGGGGUgCAg -3' miRNA: 3'- -GCAGCAG-----------UGCACuAGUAGCCCCA-GUg -5' |
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21444 | 3' | -53.6 | NC_004812.1 | + | 98605 | 0.67 | 0.958295 |
Target: 5'- gGUCGUCGCucccGUGGcCGUCGcGGccGUCGCg -3' miRNA: 3'- gCAGCAGUG----CACUaGUAGC-CC--CAGUG- -5' |
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21444 | 3' | -53.6 | NC_004812.1 | + | 5233 | 0.67 | 0.950456 |
Target: 5'- gCGUCGgccUCGCGgc--CGUCGGGG-CGCg -3' miRNA: 3'- -GCAGC---AGUGCacuaGUAGCCCCaGUG- -5' |
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21444 | 3' | -53.6 | NC_004812.1 | + | 130741 | 0.67 | 0.950456 |
Target: 5'- gCGUCGgccUCGCGgc--CGUCGGGG-CGCg -3' miRNA: 3'- -GCAGC---AGUGCacuaGUAGCCCCaGUG- -5' |
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21444 | 3' | -53.6 | NC_004812.1 | + | 53327 | 0.67 | 0.94619 |
Target: 5'- --aCGUCGgGggGGUCGgcggagggcuUCGGGGUCGCc -3' miRNA: 3'- gcaGCAGUgCa-CUAGU----------AGCCCCAGUG- -5' |
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21444 | 3' | -53.6 | NC_004812.1 | + | 26391 | 0.67 | 0.94619 |
Target: 5'- gGUCGggCGCGcuucgggGAUCgcccGUgGGGGUCGCg -3' miRNA: 3'- gCAGCa-GUGCa------CUAG----UAgCCCCAGUG- -5' |
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21444 | 3' | -53.6 | NC_004812.1 | + | 32596 | 0.68 | 0.936952 |
Target: 5'- cCGUCGUgUACG-GGUCGUaggcgccgCGGGcGUCGCa -3' miRNA: 3'- -GCAGCA-GUGCaCUAGUA--------GCCC-CAGUG- -5' |
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21444 | 3' | -53.6 | NC_004812.1 | + | 91421 | 0.68 | 0.936952 |
Target: 5'- aGUCGcgCACGUcccgGUCGGGGUCGg -3' miRNA: 3'- gCAGCa-GUGCAcuagUAGCCCCAGUg -5' |
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21444 | 3' | -53.6 | NC_004812.1 | + | 97152 | 0.68 | 0.936952 |
Target: 5'- ---gGUCGCGUGGuugaUCGcCGGGGUCGu -3' miRNA: 3'- gcagCAGUGCACU----AGUaGCCCCAGUg -5' |
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21444 | 3' | -53.6 | NC_004812.1 | + | 95673 | 0.68 | 0.927292 |
Target: 5'- uGUCGgcgcuguacggcagcCGCGUGGUCAUUGGGuGcCGCc -3' miRNA: 3'- gCAGCa--------------GUGCACUAGUAGCCC-CaGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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