Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21452 | 3' | -59.9 | NC_004812.1 | + | 116957 | 0.66 | 0.751465 |
Target: 5'- uGCgCUUCCUGGagCUCG--GGCUGUCg- -3' miRNA: 3'- -CG-GAAGGACCg-GAGCgaCCGACAGga -5' |
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21452 | 3' | -59.9 | NC_004812.1 | + | 100427 | 0.66 | 0.751465 |
Target: 5'- cGUCUUCCaGGCCaccaCGCccgGGCUGUacgCCa -3' miRNA: 3'- -CGGAAGGaCCGGa---GCGa--CCGACA---GGa -5' |
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21452 | 3' | -59.9 | NC_004812.1 | + | 153320 | 0.66 | 0.741974 |
Target: 5'- cGCCUUCgacccgcgcgcgCUGGCCUCGCUcgccgcGcGCUGcggCCc -3' miRNA: 3'- -CGGAAG------------GACCGGAGCGA------C-CGACa--GGa -5' |
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21452 | 3' | -59.9 | NC_004812.1 | + | 145355 | 0.66 | 0.741974 |
Target: 5'- gGCCguggggCUGGCCgUUGCcGGCcUGUCCg -3' miRNA: 3'- -CGGaag---GACCGG-AGCGaCCG-ACAGGa -5' |
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21452 | 3' | -59.9 | NC_004812.1 | + | 27812 | 0.66 | 0.741974 |
Target: 5'- cGCCUUCgacccgcgcgcgCUGGCCUCGCUcgccgcGcGCUGcggCCc -3' miRNA: 3'- -CGGAAG------------GACCGGAGCGA------C-CGACa--GGa -5' |
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21452 | 3' | -59.9 | NC_004812.1 | + | 92576 | 0.66 | 0.739108 |
Target: 5'- gGCCgucgucgCCUGGCUggCGgcggcgaagcggccCUGGUUGUCCg -3' miRNA: 3'- -CGGaa-----GGACCGGa-GC--------------GACCGACAGGa -5' |
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21452 | 3' | -59.9 | NC_004812.1 | + | 58946 | 0.66 | 0.722724 |
Target: 5'- gGCCg-CCUGGCCUgcCGUgaGGCUGggggCCg -3' miRNA: 3'- -CGGaaGGACCGGA--GCGa-CCGACa---GGa -5' |
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21452 | 3' | -59.9 | NC_004812.1 | + | 59131 | 0.66 | 0.722724 |
Target: 5'- aCCUUCgcagaaCUGGUCgaugcCGCUGGCgccGUCCg -3' miRNA: 3'- cGGAAG------GACCGGa----GCGACCGa--CAGGa -5' |
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21452 | 3' | -59.9 | NC_004812.1 | + | 101471 | 0.66 | 0.703175 |
Target: 5'- gGCCagcUCCUGGCC---CUGGCgcaggGUCCg -3' miRNA: 3'- -CGGa--AGGACCGGagcGACCGa----CAGGa -5' |
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21452 | 3' | -59.9 | NC_004812.1 | + | 81317 | 0.67 | 0.69331 |
Target: 5'- cGCCUUCgUGGCCcggCGCgaccugGGCgaggCCa -3' miRNA: 3'- -CGGAAGgACCGGa--GCGa-----CCGaca-GGa -5' |
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21452 | 3' | -59.9 | NC_004812.1 | + | 65083 | 0.67 | 0.683394 |
Target: 5'- cGCCgcCCUGGCCgcgCGCcccgcggaggagUGGCUGgcgcggCCc -3' miRNA: 3'- -CGGaaGGACCGGa--GCG------------ACCGACa-----GGa -5' |
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21452 | 3' | -59.9 | NC_004812.1 | + | 60108 | 0.67 | 0.683394 |
Target: 5'- cGCCgauggCCgUGGCC-CGCgccagcGGCgUGUCCUg -3' miRNA: 3'- -CGGaa---GG-ACCGGaGCGa-----CCG-ACAGGA- -5' |
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21452 | 3' | -59.9 | NC_004812.1 | + | 94742 | 0.68 | 0.633375 |
Target: 5'- aCCUUUCUGGUCgccgcggCGCUGGCcG-CCg -3' miRNA: 3'- cGGAAGGACCGGa------GCGACCGaCaGGa -5' |
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21452 | 3' | -59.9 | NC_004812.1 | + | 74088 | 0.68 | 0.623337 |
Target: 5'- cGCCUcCCggGGCCUCGCgGGCc--CCg -3' miRNA: 3'- -CGGAaGGa-CCGGAGCGaCCGacaGGa -5' |
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21452 | 3' | -59.9 | NC_004812.1 | + | 116211 | 0.68 | 0.613306 |
Target: 5'- cGCgg-CCUGGCUcgCGCgGGCgGUCCUg -3' miRNA: 3'- -CGgaaGGACCGGa-GCGaCCGaCAGGA- -5' |
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21452 | 3' | -59.9 | NC_004812.1 | + | 100061 | 0.69 | 0.573385 |
Target: 5'- cGCCUUCCUGGUUggCGCgguggggucggGGCUcgucGUCCc -3' miRNA: 3'- -CGGAAGGACCGGa-GCGa----------CCGA----CAGGa -5' |
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21452 | 3' | -59.9 | NC_004812.1 | + | 122180 | 0.69 | 0.563489 |
Target: 5'- gGCCUgggCCUgGGUCUgGUgggcgGGCUGUCUg -3' miRNA: 3'- -CGGAa--GGA-CCGGAgCGa----CCGACAGGa -5' |
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21452 | 3' | -59.9 | NC_004812.1 | + | 153081 | 0.69 | 0.563489 |
Target: 5'- gGCCUgggCCUgGGUCUgGUgggcgGGCUGUCUg -3' miRNA: 3'- -CGGAa--GGA-CCGGAgCGa----CCGACAGGa -5' |
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21452 | 3' | -59.9 | NC_004812.1 | + | 9384 | 0.69 | 0.55364 |
Target: 5'- -aCUUCgUGGCCgCGCUGGCgccccgCCUa -3' miRNA: 3'- cgGAAGgACCGGaGCGACCGaca---GGA- -5' |
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21452 | 3' | -59.9 | NC_004812.1 | + | 87694 | 0.69 | 0.52057 |
Target: 5'- gGCCccaUCCUGGCC-CGCagcggcggcaucgGGCUGUgCCUg -3' miRNA: 3'- -CGGa--AGGACCGGaGCGa------------CCGACA-GGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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