miRNA display CGI


Results 41 - 60 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21452 5' -56.4 NC_004812.1 + 112486 0.66 0.898225
Target:  5'- gCgGGGGCucgacGCCCCggccgucagGCGGGcCCUGUu -3'
miRNA:   3'- -GgUCCUGua---UGGGGa--------CGUCCuGGACG- -5'
21452 5' -56.4 NC_004812.1 + 83560 0.66 0.897581
Target:  5'- uCCGGGAggcCGUgcGCCCCgUGCAGGucgcauaGCC-GCu -3'
miRNA:   3'- -GGUCCU---GUA--UGGGG-ACGUCC-------UGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 124533 0.66 0.891689
Target:  5'- uCCGGGGCcggGCCCCa-CGGGcCCcGCg -3'
miRNA:   3'- -GGUCCUGua-UGGGGacGUCCuGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 125421 0.66 0.891689
Target:  5'- gCGGGACGa--CCCUGCGgacgacGGACC-GCc -3'
miRNA:   3'- gGUCCUGUaugGGGACGU------CCUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 155610 0.66 0.891689
Target:  5'- -gGGGGCG-ACCCCggaccccCAGGACCcccgGCg -3'
miRNA:   3'- ggUCCUGUaUGGGGac-----GUCCUGGa---CG- -5'
21452 5' -56.4 NC_004812.1 + 74735 0.66 0.891689
Target:  5'- cCCGGGACuucgGCCUC---GGGuACCUGCc -3'
miRNA:   3'- -GGUCCUGua--UGGGGacgUCC-UGGACG- -5'
21452 5' -56.4 NC_004812.1 + 30520 0.66 0.891689
Target:  5'- cCCGGGGCcggggGCCgCgccGCGGGACggGCg -3'
miRNA:   3'- -GGUCCUGua---UGGgGa--CGUCCUGgaCG- -5'
21452 5' -56.4 NC_004812.1 + 145499 0.66 0.891689
Target:  5'- aCAGGACGaACaUCUGCAGGcuCUUGUg -3'
miRNA:   3'- gGUCCUGUaUGgGGACGUCCu-GGACG- -5'
21452 5' -56.4 NC_004812.1 + 95978 0.66 0.891689
Target:  5'- gCCAGGGgcUGUACCUCUGgauccgGGGGCCcGCc -3'
miRNA:   3'- -GGUCCU--GUAUGGGGACg-----UCCUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 44374 0.66 0.891689
Target:  5'- cCCGGGGCGcAgCCCgcggcgccgcGCAGGGCCa-- -3'
miRNA:   3'- -GGUCCUGUaUgGGGa---------CGUCCUGGacg -5'
21452 5' -56.4 NC_004812.1 + 156028 0.66 0.891689
Target:  5'- cCCGGGGCcggggGCCgCgccGCGGGACggGCg -3'
miRNA:   3'- -GGUCCUGua---UGGgGa--CGUCCUGgaCG- -5'
21452 5' -56.4 NC_004812.1 + 76154 0.66 0.890355
Target:  5'- gCCGcGACcaccuugcccaGCUCCUGCAGGGCCcgGCc -3'
miRNA:   3'- -GGUcCUGua---------UGGGGACGUCCUGGa-CG- -5'
21452 5' -56.4 NC_004812.1 + 131189 0.66 0.889685
Target:  5'- cCCGGGACc--CCCCUGCGGuucuacgaggugaaGugCcGCg -3'
miRNA:   3'- -GGUCCUGuauGGGGACGUC--------------CugGaCG- -5'
21452 5' -56.4 NC_004812.1 + 81438 0.66 0.884929
Target:  5'- uCCGGGGCccaggGCCCCagGCgaucgGGGGCCUc- -3'
miRNA:   3'- -GGUCCUGua---UGGGGa-CG-----UCCUGGAcg -5'
21452 5' -56.4 NC_004812.1 + 153581 0.66 0.884929
Target:  5'- gCuGGGCAaccGCCUCUGCGGGcccgacacggccGCCUGg -3'
miRNA:   3'- gGuCCUGUa--UGGGGACGUCC------------UGGACg -5'
21452 5' -56.4 NC_004812.1 + 28072 0.66 0.884929
Target:  5'- gCuGGGCAaccGCCUCUGCGGGcccgacacggccGCCUGg -3'
miRNA:   3'- gGuCCUGUa--UGGGGACGUCC------------UGGACg -5'
21452 5' -56.4 NC_004812.1 + 131934 0.66 0.884929
Target:  5'- gCGGGAU---CCCgUGCcGcGACCUGCu -3'
miRNA:   3'- gGUCCUGuauGGGgACGuC-CUGGACG- -5'
21452 5' -56.4 NC_004812.1 + 155091 0.66 0.884929
Target:  5'- gCGGcGGCAUGCCCUcGCGcggcggcgcGGGCCgGCc -3'
miRNA:   3'- gGUC-CUGUAUGGGGaCGU---------CCUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 27003 0.66 0.884929
Target:  5'- gCCGGGGaggacgGCCCC-GcCGGGGCC-GCg -3'
miRNA:   3'- -GGUCCUgua---UGGGGaC-GUCCUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 29583 0.66 0.884929
Target:  5'- gCGGcGGCAUGCCCUcGCGcggcggcgcGGGCCgGCc -3'
miRNA:   3'- gGUC-CUGUAUGGGGaCGU---------CCUGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.