miRNA display CGI


Results 21 - 40 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21452 5' -56.4 NC_004812.1 + 18781 0.75 0.455039
Target:  5'- gCCAGGACc--UCCCgggGCcagGGGGCCUGCu -3'
miRNA:   3'- -GGUCCUGuauGGGGa--CG---UCCUGGACG- -5'
21452 5' -56.4 NC_004812.1 + 19279 0.67 0.877949
Target:  5'- uCgGGGGCAggGCCCCcgGCccGGCgUGCa -3'
miRNA:   3'- -GgUCCUGUa-UGGGGa-CGucCUGgACG- -5'
21452 5' -56.4 NC_004812.1 + 19564 0.68 0.831726
Target:  5'- cCCAGGcCGgccaccACCCCgGCcaccuccgaggGGGGCUUGCa -3'
miRNA:   3'- -GGUCCuGUa-----UGGGGaCG-----------UCCUGGACG- -5'
21452 5' -56.4 NC_004812.1 + 20759 0.71 0.651661
Target:  5'- gUCGGGGCGgcugACCUCUGCGuuccguuccuGGAgcaCCUGCg -3'
miRNA:   3'- -GGUCCUGUa---UGGGGACGU----------CCU---GGACG- -5'
21452 5' -56.4 NC_004812.1 + 22667 0.66 0.910609
Target:  5'- cCCGGGGCcggcgggaGCCCCgaGC-GGACCccGCg -3'
miRNA:   3'- -GGUCCUGua------UGGGGa-CGuCCUGGa-CG- -5'
21452 5' -56.4 NC_004812.1 + 23235 0.67 0.847921
Target:  5'- cCCGGGGgGUGCUga-GCGGGACCUaccuGCg -3'
miRNA:   3'- -GGUCCUgUAUGGggaCGUCCUGGA----CG- -5'
21452 5' -56.4 NC_004812.1 + 24496 0.74 0.501883
Target:  5'- uCCuGGACGggggGCCCCcgcgccGCGGGGgCUGCg -3'
miRNA:   3'- -GGuCCUGUa---UGGGGa-----CGUCCUgGACG- -5'
21452 5' -56.4 NC_004812.1 + 24979 0.81 0.191489
Target:  5'- gCgAGGACGUACgCCUGCaccAGGAUCUGCu -3'
miRNA:   3'- -GgUCCUGUAUGgGGACG---UCCUGGACG- -5'
21452 5' -56.4 NC_004812.1 + 25677 0.68 0.831726
Target:  5'- cCCGGGcGCuguCCCCgccgucguccGCGGGGCCgGCg -3'
miRNA:   3'- -GGUCC-UGuauGGGGa---------CGUCCUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 27003 0.66 0.884929
Target:  5'- gCCGGGGaggacgGCCCC-GcCGGGGCC-GCg -3'
miRNA:   3'- -GGUCCUgua---UGGGGaC-GUCCUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 27190 0.68 0.831726
Target:  5'- gCCAGGACG-GCCCgCcGCAGcGACgCgGCg -3'
miRNA:   3'- -GGUCCUGUaUGGG-GaCGUC-CUG-GaCG- -5'
21452 5' -56.4 NC_004812.1 + 27260 0.66 0.910609
Target:  5'- gCuGGugcuCAUGCgCCUGCgcgGGGACCUccGCg -3'
miRNA:   3'- gGuCCu---GUAUGgGGACG---UCCUGGA--CG- -5'
21452 5' -56.4 NC_004812.1 + 27654 0.69 0.769824
Target:  5'- gCCGGGcCcgACCCCcGCGGcGGCUgGCg -3'
miRNA:   3'- -GGUCCuGuaUGGGGaCGUC-CUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 27937 0.68 0.806111
Target:  5'- gCCAGGucCcgACCCCg--AGGACgUGCg -3'
miRNA:   3'- -GGUCCu-GuaUGGGGacgUCCUGgACG- -5'
21452 5' -56.4 NC_004812.1 + 27997 0.69 0.779099
Target:  5'- cCCGGGGCGUACC---GCGGGGgCUGa -3'
miRNA:   3'- -GGUCCUGUAUGGggaCGUCCUgGACg -5'
21452 5' -56.4 NC_004812.1 + 28072 0.66 0.884929
Target:  5'- gCuGGGCAaccGCCUCUGCGGGcccgacacggccGCCUGg -3'
miRNA:   3'- gGuCCUGUa--UGGGGACGUCC------------UGGACg -5'
21452 5' -56.4 NC_004812.1 + 28156 0.85 0.118192
Target:  5'- gCAGGGCGUGCUCCUGCucuccacgcGGGACCUGg -3'
miRNA:   3'- gGUCCUGUAUGGGGACG---------UCCUGGACg -5'
21452 5' -56.4 NC_004812.1 + 29460 0.68 0.797251
Target:  5'- -gGGGACGggcggGCCgC-GCGGGACCcGCg -3'
miRNA:   3'- ggUCCUGUa----UGGgGaCGUCCUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 29583 0.66 0.884929
Target:  5'- gCGGcGGCAUGCCCUcGCGcggcggcgcGGGCCgGCc -3'
miRNA:   3'- gGUC-CUGUAUGGGGaCGU---------CCUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 29881 0.69 0.769824
Target:  5'- gCCAGGA---ACCCCggggGCcGGGCCggGCc -3'
miRNA:   3'- -GGUCCUguaUGGGGa---CGuCCUGGa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.