miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21452 5' -56.4 NC_004812.1 + 222 0.66 0.904532
Target:  5'- -gGGGGCccaagGCUCCcGCGGGGCCcaagGCu -3'
miRNA:   3'- ggUCCUGua---UGGGGaCGUCCUGGa---CG- -5'
21452 5' -56.4 NC_004812.1 + 1014 0.73 0.521211
Target:  5'- gCCGGGGCcgcGCCCCcGCgAGGGCCcgGCc -3'
miRNA:   3'- -GGUCCUGua-UGGGGaCG-UCCUGGa-CG- -5'
21452 5' -56.4 NC_004812.1 + 2137 0.75 0.428093
Target:  5'- uCCGGGGag-GCCCCgcggGCGGGGCUcGCg -3'
miRNA:   3'- -GGUCCUguaUGGGGa---CGUCCUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 3513 0.81 0.191489
Target:  5'- cCCGGGGCcggcgGCCCCggggGCGGGGCCgcgGCg -3'
miRNA:   3'- -GGUCCUGua---UGGGGa---CGUCCUGGa--CG- -5'
21452 5' -56.4 NC_004812.1 + 4833 0.68 0.831726
Target:  5'- gCCccGACccagcCCCCUGCGGGGCCggggagggGCc -3'
miRNA:   3'- -GGucCUGuau--GGGGACGUCCUGGa-------CG- -5'
21452 5' -56.4 NC_004812.1 + 5444 0.67 0.873657
Target:  5'- cCCGGGcCGU-CUCCUccaccauggaggccaGCAGGGCCaGCu -3'
miRNA:   3'- -GGUCCuGUAuGGGGA---------------CGUCCUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 5817 0.66 0.910609
Target:  5'- gCGGGGCGcggcgGgCUCUGCGGG-CCgGCg -3'
miRNA:   3'- gGUCCUGUa----UgGGGACGUCCuGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 5930 0.74 0.490439
Target:  5'- cCCGGGGCAgGCCCCcgggcacaggggGCAGGGCCcggggagGCc -3'
miRNA:   3'- -GGUCCUGUaUGGGGa-----------CGUCCUGGa------CG- -5'
21452 5' -56.4 NC_004812.1 + 6314 0.67 0.863346
Target:  5'- cCCGGGcacGCGggggGCCCCggGCAGGAgggGCa -3'
miRNA:   3'- -GGUCC---UGUa---UGGGGa-CGUCCUggaCG- -5'
21452 5' -56.4 NC_004812.1 + 6455 0.72 0.611046
Target:  5'- gCCGGGACGaccgcggGCCCggggaGCGGGcCCUGCg -3'
miRNA:   3'- -GGUCCUGUa------UGGGga---CGUCCuGGACG- -5'
21452 5' -56.4 NC_004812.1 + 6912 0.69 0.74131
Target:  5'- cUCGGGGCGcgcUGCgCCC-GCGGGGCCgggGUg -3'
miRNA:   3'- -GGUCCUGU---AUG-GGGaCGUCCUGGa--CG- -5'
21452 5' -56.4 NC_004812.1 + 7444 0.67 0.847129
Target:  5'- aCCgGGGACGccGCCCCUcGCcuccgcgGGGACC-GCg -3'
miRNA:   3'- -GG-UCCUGUa-UGGGGA-CG-------UCCUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 9476 0.67 0.870753
Target:  5'- gCCGcGACGUGCUCgUGCGcaGGCCUGUa -3'
miRNA:   3'- -GGUcCUGUAUGGGgACGUc-CUGGACG- -5'
21452 5' -56.4 NC_004812.1 + 13829 0.73 0.560673
Target:  5'- gCCGGG-CGUACUCCcGCAGGGuCCgguUGCa -3'
miRNA:   3'- -GGUCCuGUAUGGGGaCGUCCU-GG---ACG- -5'
21452 5' -56.4 NC_004812.1 + 13870 0.67 0.877949
Target:  5'- gUCAGGACGUucuCgCUCUGCcGGAUCgaGCa -3'
miRNA:   3'- -GGUCCUGUAu--G-GGGACGuCCUGGa-CG- -5'
21452 5' -56.4 NC_004812.1 + 14254 0.7 0.71195
Target:  5'- cCCGGGAUcgGCCCCcuCGGcGACCgcacgGCg -3'
miRNA:   3'- -GGUCCUGuaUGGGGacGUC-CUGGa----CG- -5'
21452 5' -56.4 NC_004812.1 + 14552 0.67 0.877949
Target:  5'- gCgGGGGCGgGCUCgUcGCccGGGGCCUGCu -3'
miRNA:   3'- -GgUCCUGUaUGGGgA-CG--UCCUGGACG- -5'
21452 5' -56.4 NC_004812.1 + 16334 0.75 0.445051
Target:  5'- aCCAGuACGU-CCCCUccuacgcGCAGGACCUGg -3'
miRNA:   3'- -GGUCcUGUAuGGGGA-------CGUCCUGGACg -5'
21452 5' -56.4 NC_004812.1 + 16575 0.67 0.839916
Target:  5'- -uGGGACGgcgaccggGCCCgCgggcgGCAGGGCCgcaGCa -3'
miRNA:   3'- ggUCCUGUa-------UGGG-Ga----CGUCCUGGa--CG- -5'
21452 5' -56.4 NC_004812.1 + 18467 0.68 0.831726
Target:  5'- -gGGGGCGcgGCCCCgcgcccGCGGGGCCcagacacagGCa -3'
miRNA:   3'- ggUCCUGUa-UGGGGa-----CGUCCUGGa--------CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.