miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21452 5' -56.4 NC_004812.1 + 156028 0.66 0.891689
Target:  5'- cCCGGGGCcggggGCCgCgccGCGGGACggGCg -3'
miRNA:   3'- -GGUCCUGua---UGGgGa--CGUCCUGgaCG- -5'
21452 5' -56.4 NC_004812.1 + 112542 0.66 0.898225
Target:  5'- aCCuGGAUAUgcuggucgACCUCgGCcuGGACCUGUc -3'
miRNA:   3'- -GGuCCUGUA--------UGGGGaCGu-CCUGGACG- -5'
21452 5' -56.4 NC_004812.1 + 222 0.66 0.904532
Target:  5'- -gGGGGCccaagGCUCCcGCGGGGCCcaagGCu -3'
miRNA:   3'- ggUCCUGua---UGGGGaCGUCCUGGa---CG- -5'
21452 5' -56.4 NC_004812.1 + 76154 0.66 0.890355
Target:  5'- gCCGcGACcaccuugcccaGCUCCUGCAGGGCCcgGCc -3'
miRNA:   3'- -GGUcCUGua---------UGGGGACGUCCUGGa-CG- -5'
21452 5' -56.4 NC_004812.1 + 153581 0.66 0.884929
Target:  5'- gCuGGGCAaccGCCUCUGCGGGcccgacacggccGCCUGg -3'
miRNA:   3'- gGuCCUGUa--UGGGGACGUCC------------UGGACg -5'
21452 5' -56.4 NC_004812.1 + 60128 0.66 0.884929
Target:  5'- gCCAGcGGCGUguccuGCCCCUccaggaGGGGCCagGCg -3'
miRNA:   3'- -GGUC-CUGUA-----UGGGGAcg----UCCUGGa-CG- -5'
21452 5' -56.4 NC_004812.1 + 96400 0.66 0.898225
Target:  5'- uUCGGGAgCGgcgagGCCgUCUGCAcGGccGCCUGCg -3'
miRNA:   3'- -GGUCCU-GUa----UGG-GGACGU-CC--UGGACG- -5'
21452 5' -56.4 NC_004812.1 + 100839 0.66 0.898225
Target:  5'- gCGGGGC-UGCCCagggGCAGGGC--GCg -3'
miRNA:   3'- gGUCCUGuAUGGGga--CGUCCUGgaCG- -5'
21452 5' -56.4 NC_004812.1 + 78763 0.66 0.912975
Target:  5'- aCCGGGAgGUGCgcggcgcccuggacgCCCUggcGCGGGGCgUGg -3'
miRNA:   3'- -GGUCCUgUAUG---------------GGGA---CGUCCUGgACg -5'
21452 5' -56.4 NC_004812.1 + 81438 0.66 0.884929
Target:  5'- uCCGGGGCccaggGCCCCagGCgaucgGGGGCCUc- -3'
miRNA:   3'- -GGUCCUGua---UGGGGa-CG-----UCCUGGAcg -5'
21452 5' -56.4 NC_004812.1 + 71050 0.66 0.884241
Target:  5'- -gAGGGCGgccGCCCCUGCGgcgguucGGGCg-GCg -3'
miRNA:   3'- ggUCCUGUa--UGGGGACGU-------CCUGgaCG- -5'
21452 5' -56.4 NC_004812.1 + 95978 0.66 0.891689
Target:  5'- gCCAGGGgcUGUACCUCUGgauccgGGGGCCcGCc -3'
miRNA:   3'- -GGUCCU--GUAUGGGGACg-----UCCUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 64369 0.66 0.898866
Target:  5'- aCCGGGAC-UACCUCgccaucgagguggggGgCAGGcGCCUGUu -3'
miRNA:   3'- -GGUCCUGuAUGGGGa--------------C-GUCC-UGGACG- -5'
21452 5' -56.4 NC_004812.1 + 76818 0.66 0.898225
Target:  5'- gCAGGGCGgcgcgcACCUCcGgGGGcgcGCCUGCg -3'
miRNA:   3'- gGUCCUGUa-----UGGGGaCgUCC---UGGACG- -5'
21452 5' -56.4 NC_004812.1 + 76379 0.66 0.903912
Target:  5'- cCCAGGGCGccgaggcgcgcgaUGgCCCgGCGGGcGCCgaggGCc -3'
miRNA:   3'- -GGUCCUGU-------------AUgGGGaCGUCC-UGGa---CG- -5'
21452 5' -56.4 NC_004812.1 + 44374 0.66 0.891689
Target:  5'- cCCGGGGCGcAgCCCgcggcgccgcGCAGGGCCa-- -3'
miRNA:   3'- -GGUCCUGUaUgGGGa---------CGUCCUGGacg -5'
21452 5' -56.4 NC_004812.1 + 48825 0.66 0.904532
Target:  5'- -gAGGGCGgccgGCCCCaGUaccgcuaccgcgAGGACCgGCu -3'
miRNA:   3'- ggUCCUGUa---UGGGGaCG------------UCCUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 119206 0.66 0.898225
Target:  5'- uCCuGGugGUGuccgcggcccCCCCUugccuguacccGCAGGGCCcGCu -3'
miRNA:   3'- -GGuCCugUAU----------GGGGA-----------CGUCCUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 152512 0.66 0.884929
Target:  5'- gCCGGGGaggacgGCCCC-GcCGGGGCC-GCg -3'
miRNA:   3'- -GGUCCUgua---UGGGGaC-GUCCUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 83560 0.66 0.897581
Target:  5'- uCCGGGAggcCGUgcGCCCCgUGCAGGucgcauaGCC-GCu -3'
miRNA:   3'- -GGUCCU---GUA--UGGGG-ACGUCC-------UGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.