miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21452 5' -56.4 NC_004812.1 + 66172 0.71 0.621195
Target:  5'- gCuGGGCGagcACCCCggccaGCAGGuCCUGCa -3'
miRNA:   3'- gGuCCUGUa--UGGGGa----CGUCCuGGACG- -5'
21452 5' -56.4 NC_004812.1 + 30765 0.73 0.544774
Target:  5'- cCCGGGGCcgcgggcgagccgGCCCCgccUGCGGGGCCgcggGCc -3'
miRNA:   3'- -GGUCCUGua-----------UGGGG---ACGUCCUGGa---CG- -5'
21452 5' -56.4 NC_004812.1 + 120027 0.73 0.547744
Target:  5'- cCUGGGAgacccccggcccccCGUGCCCCUGCGGGcuccCCUcGCg -3'
miRNA:   3'- -GGUCCU--------------GUAUGGGGACGUCCu---GGA-CG- -5'
21452 5' -56.4 NC_004812.1 + 122096 0.73 0.55072
Target:  5'- gCCGGGGCGgGCCUggGuCAGGGCCUGg -3'
miRNA:   3'- -GGUCCUGUaUGGGgaC-GUCCUGGACg -5'
21452 5' -56.4 NC_004812.1 + 63773 0.73 0.55072
Target:  5'- aCCGGGACAUcCCCCgGUAcuacgccgccGGGCCcGCg -3'
miRNA:   3'- -GGUCCUGUAuGGGGaCGU----------CCUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 13829 0.73 0.560673
Target:  5'- gCCGGG-CGUACUCCcGCAGGGuCCgguUGCa -3'
miRNA:   3'- -GGUCCuGUAUGGGGaCGUCCU-GG---ACG- -5'
21452 5' -56.4 NC_004812.1 + 109880 0.72 0.600912
Target:  5'- aCCuGGACGUGgCUCUGCGGGAgCCg-- -3'
miRNA:   3'- -GGuCCUGUAUgGGGACGUCCU-GGacg -5'
21452 5' -56.4 NC_004812.1 + 6455 0.72 0.611046
Target:  5'- gCCGGGACGaccgcggGCCCggggaGCGGGcCCUGCg -3'
miRNA:   3'- -GGUCCUGUa------UGGGga---CGUCCuGGACG- -5'
21452 5' -56.4 NC_004812.1 + 97234 0.71 0.621195
Target:  5'- -uGGGGCcucGCgCCCUGCGGGGCCggGUg -3'
miRNA:   3'- ggUCCUGua-UG-GGGACGUCCUGGa-CG- -5'
21452 5' -56.4 NC_004812.1 + 142365 0.73 0.540821
Target:  5'- -gGGGGCcgAUCCCgggGUGGGACCUcGCa -3'
miRNA:   3'- ggUCCUGuaUGGGGa--CGUCCUGGA-CG- -5'
21452 5' -56.4 NC_004812.1 + 126523 0.73 0.521211
Target:  5'- gCCGGGGCcgcGCCCCcGCgAGGGCCcgGCc -3'
miRNA:   3'- -GGUCCUGua-UGGGGaCG-UCCUGGa-CG- -5'
21452 5' -56.4 NC_004812.1 + 24496 0.74 0.501883
Target:  5'- uCCuGGACGggggGCCCCcgcgccGCGGGGgCUGCg -3'
miRNA:   3'- -GGuCCUGUa---UGGGGa-----CGUCCUgGACG- -5'
21452 5' -56.4 NC_004812.1 + 24979 0.81 0.191489
Target:  5'- gCgAGGACGUACgCCUGCaccAGGAUCUGCu -3'
miRNA:   3'- -GgUCCUGUAUGgGGACG---UCCUGGACG- -5'
21452 5' -56.4 NC_004812.1 + 129021 0.81 0.191489
Target:  5'- cCCGGGGCcggcgGCCCCggggGCGGGGCCgcgGCg -3'
miRNA:   3'- -GGUCCUGua---UGGGGa---CGUCCUGGa--CG- -5'
21452 5' -56.4 NC_004812.1 + 95543 0.77 0.337939
Target:  5'- cCCGGGGCGUcgcGCCCCgGCGGGGuCgaGCg -3'
miRNA:   3'- -GGUCCUGUA---UGGGGaCGUCCU-GgaCG- -5'
21452 5' -56.4 NC_004812.1 + 119765 0.76 0.402112
Target:  5'- cCCGGGcCcUGCCCCcugUGCccgGGGGCCUGCc -3'
miRNA:   3'- -GGUCCuGuAUGGGG---ACG---UCCUGGACG- -5'
21452 5' -56.4 NC_004812.1 + 127646 0.75 0.428093
Target:  5'- uCCGGGGag-GCCCCgcggGCGGGGCUcGCg -3'
miRNA:   3'- -GGUCCUguaUGGGGa---CGUCCUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 16334 0.75 0.445051
Target:  5'- aCCAGuACGU-CCCCUccuacgcGCAGGACCUGg -3'
miRNA:   3'- -GGUCcUGUAuGGGGA-------CGUCCUGGACg -5'
21452 5' -56.4 NC_004812.1 + 18781 0.75 0.455039
Target:  5'- gCCAGGACc--UCCCgggGCcagGGGGCCUGCu -3'
miRNA:   3'- -GGUCCUGuauGGGGa--CG---UCCUGGACG- -5'
21452 5' -56.4 NC_004812.1 + 5930 0.74 0.490439
Target:  5'- cCCGGGGCAgGCCCCcgggcacaggggGCAGGGCCcggggagGCc -3'
miRNA:   3'- -GGUCCUGUaUGGGGa-----------CGUCCUGGa------CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.