miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21452 5' -56.4 NC_004812.1 + 90415 1.13 0.001515
Target:  5'- gCCAGGACAUACCCCUGCAGGACCUGCu -3'
miRNA:   3'- -GGUCCUGUAUGGGGACGUCCUGGACG- -5'
21452 5' -56.4 NC_004812.1 + 28156 0.85 0.118192
Target:  5'- gCAGGGCGUGCUCCUGCucuccacgcGGGACCUGg -3'
miRNA:   3'- gGUCCUGUAUGGGGACG---------UCCUGGACg -5'
21452 5' -56.4 NC_004812.1 + 153665 0.82 0.173315
Target:  5'- gCAGGGCGUGCUCCUGCucuccacgcGGACCUGg -3'
miRNA:   3'- gGUCCUGUAUGGGGACGu--------CCUGGACg -5'
21452 5' -56.4 NC_004812.1 + 129021 0.81 0.191489
Target:  5'- cCCGGGGCcggcgGCCCCggggGCGGGGCCgcgGCg -3'
miRNA:   3'- -GGUCCUGua---UGGGGa---CGUCCUGGa--CG- -5'
21452 5' -56.4 NC_004812.1 + 24979 0.81 0.191489
Target:  5'- gCgAGGACGUACgCCUGCaccAGGAUCUGCu -3'
miRNA:   3'- -GgUCCUGUAUGgGGACG---UCCUGGACG- -5'
21452 5' -56.4 NC_004812.1 + 3513 0.81 0.191489
Target:  5'- cCCGGGGCcggcgGCCCCggggGCGGGGCCgcgGCg -3'
miRNA:   3'- -GGUCCUGua---UGGGGa---CGUCCUGGa--CG- -5'
21452 5' -56.4 NC_004812.1 + 95543 0.77 0.337939
Target:  5'- cCCGGGGCGUcgcGCCCCgGCGGGGuCgaGCg -3'
miRNA:   3'- -GGUCCUGUA---UGGGGaCGUCCU-GgaCG- -5'
21452 5' -56.4 NC_004812.1 + 115899 0.77 0.337939
Target:  5'- gCGGGACGagauuCCCCUGgGGGACCgcggGCu -3'
miRNA:   3'- gGUCCUGUau---GGGGACgUCCUGGa---CG- -5'
21452 5' -56.4 NC_004812.1 + 142044 0.76 0.361107
Target:  5'- cCCGcGGGCcUGCCCCUGCGGGAguuucCCUucGCg -3'
miRNA:   3'- -GGU-CCUGuAUGGGGACGUCCU-----GGA--CG- -5'
21452 5' -56.4 NC_004812.1 + 125709 0.76 0.377155
Target:  5'- gCCGGGAgGUGCCCgCggggcGCGGGGCC-GCg -3'
miRNA:   3'- -GGUCCUgUAUGGG-Ga----CGUCCUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 119765 0.76 0.402112
Target:  5'- cCCGGGcCcUGCCCCcugUGCccgGGGGCCUGCc -3'
miRNA:   3'- -GGUCCuGuAUGGGG---ACG---UCCUGGACG- -5'
21452 5' -56.4 NC_004812.1 + 150667 0.76 0.402112
Target:  5'- cCCGGGcCcUGCCCCcugUGCccgGGGGCCUGCc -3'
miRNA:   3'- -GGUCCuGuAUGGGG---ACG---UCCUGGACG- -5'
21452 5' -56.4 NC_004812.1 + 127646 0.75 0.428093
Target:  5'- uCCGGGGag-GCCCCgcggGCGGGGCUcGCg -3'
miRNA:   3'- -GGUCCUguaUGGGGa---CGUCCUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 2137 0.75 0.428093
Target:  5'- uCCGGGGag-GCCCCgcggGCGGGGCUcGCg -3'
miRNA:   3'- -GGUCCUguaUGGGGa---CGUCCUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 56963 0.75 0.430745
Target:  5'- aCCGGGGCAUccugaGCCaguacuggaagcaCCUGCAGGcgguggugagcggggGCCUGCg -3'
miRNA:   3'- -GGUCCUGUA-----UGG-------------GGACGUCC---------------UGGACG- -5'
21452 5' -56.4 NC_004812.1 + 16334 0.75 0.445051
Target:  5'- aCCAGuACGU-CCCCUccuacgcGCAGGACCUGg -3'
miRNA:   3'- -GGUCcUGUAuGGGGA-------CGUCCUGGACg -5'
21452 5' -56.4 NC_004812.1 + 18781 0.75 0.455039
Target:  5'- gCCAGGACc--UCCCgggGCcagGGGGCCUGCu -3'
miRNA:   3'- -GGUCCUGuauGGGGa--CG---UCCUGGACG- -5'
21452 5' -56.4 NC_004812.1 + 124971 0.74 0.467924
Target:  5'- uCCAGGACGaGCUCCUGCGgcgcuuuccggcgcuGGAggcgccCCUGCg -3'
miRNA:   3'- -GGUCCUGUaUGGGGACGU---------------CCU------GGACG- -5'
21452 5' -56.4 NC_004812.1 + 5930 0.74 0.490439
Target:  5'- cCCGGGGCAgGCCCCcgggcacaggggGCAGGGCCcggggagGCc -3'
miRNA:   3'- -GGUCCUGUaUGGGGa-----------CGUCCUGGa------CG- -5'
21452 5' -56.4 NC_004812.1 + 36831 0.74 0.490439
Target:  5'- cCCGGGGCAgGCCCCcgggcacaggggGCAGGGCCcggggagGCc -3'
miRNA:   3'- -GGUCCUGUaUGGGGa-----------CGUCCUGGa------CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.