Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21458 | 5' | -56 | NC_004812.1 | + | 86611 | 0.66 | 0.898127 |
Target: 5'- cGGGCcgCGGC-GCGGUUgcCCAGCGgGUg -3' miRNA: 3'- -CUUGuaGCCGaCGUCGA--GGUCGCaCA- -5' |
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21458 | 5' | -56 | NC_004812.1 | + | 74860 | 0.66 | 0.891444 |
Target: 5'- aGAACAUCGaGCaGCuGCUCC-GCGa-- -3' miRNA: 3'- -CUUGUAGC-CGaCGuCGAGGuCGCaca -5' |
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21458 | 5' | -56 | NC_004812.1 | + | 68868 | 0.66 | 0.884527 |
Target: 5'- -cGCGUCGGUccGCGGCcCCGGCGc-- -3' miRNA: 3'- cuUGUAGCCGa-CGUCGaGGUCGCaca -5' |
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21458 | 5' | -56 | NC_004812.1 | + | 133565 | 0.66 | 0.870009 |
Target: 5'- cGGCGUCGaGCUcgGCGGCguccugCCGGCGgcgGUa -3' miRNA: 3'- cUUGUAGC-CGA--CGUCGa-----GGUCGCa--CA- -5' |
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21458 | 5' | -56 | NC_004812.1 | + | 19273 | 0.66 | 0.862418 |
Target: 5'- cGAAUAUCGGggGCagggcccccGGC-CCGGCGUGc -3' miRNA: 3'- -CUUGUAGCCgaCG---------UCGaGGUCGCACa -5' |
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21458 | 5' | -56 | NC_004812.1 | + | 3755 | 0.67 | 0.854613 |
Target: 5'- cAGCAgCGGCgcgGCGGCgCCGGCGa-- -3' miRNA: 3'- cUUGUaGCCGa--CGUCGaGGUCGCaca -5' |
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21458 | 5' | -56 | NC_004812.1 | + | 45198 | 0.67 | 0.854613 |
Target: 5'- cGGCGgcgCGGCcgGCAGCgagaCGGCGUGc -3' miRNA: 3'- cUUGUa--GCCGa-CGUCGag--GUCGCACa -5' |
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21458 | 5' | -56 | NC_004812.1 | + | 129263 | 0.67 | 0.854613 |
Target: 5'- cAGCAgCGGCgcgGCGGCgCCGGCGa-- -3' miRNA: 3'- cUUGUaGCCGa--CGUCGaGGUCGCaca -5' |
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21458 | 5' | -56 | NC_004812.1 | + | 60869 | 0.67 | 0.846601 |
Target: 5'- gGGGCGcgCGGCUG-GGCUCCAG-GUGc -3' miRNA: 3'- -CUUGUa-GCCGACgUCGAGGUCgCACa -5' |
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21458 | 5' | -56 | NC_004812.1 | + | 47653 | 0.67 | 0.845789 |
Target: 5'- cGAACGUCGGCgGCGaugcgccGCUCCA-CGUa- -3' miRNA: 3'- -CUUGUAGCCGaCGU-------CGAGGUcGCAca -5' |
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21458 | 5' | -56 | NC_004812.1 | + | 128901 | 0.67 | 0.83839 |
Target: 5'- aGGGCggCGGCgGagGGCgCCGGCGUGUg -3' miRNA: 3'- -CUUGuaGCCGaCg-UCGaGGUCGCACA- -5' |
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21458 | 5' | -56 | NC_004812.1 | + | 3393 | 0.67 | 0.83839 |
Target: 5'- aGGGCggCGGCgGagGGCgCCGGCGUGUg -3' miRNA: 3'- -CUUGuaGCCGaCg-UCGaGGUCGCACA- -5' |
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21458 | 5' | -56 | NC_004812.1 | + | 79337 | 0.67 | 0.829985 |
Target: 5'- gGGGCGggGGCggGCAGCgCCAGCGg-- -3' miRNA: 3'- -CUUGUagCCGa-CGUCGaGGUCGCaca -5' |
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21458 | 5' | -56 | NC_004812.1 | + | 102976 | 0.68 | 0.785352 |
Target: 5'- ---aGUCGGUgucgucggGCAGCUCCAGCa--- -3' miRNA: 3'- cuugUAGCCGa-------CGUCGAGGUCGcaca -5' |
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21458 | 5' | -56 | NC_004812.1 | + | 81805 | 0.68 | 0.785352 |
Target: 5'- cGGCGUCGGCcccgGGCUCCaggAGCGUGa -3' miRNA: 3'- cUUGUAGCCGacg-UCGAGG---UCGCACa -5' |
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21458 | 5' | -56 | NC_004812.1 | + | 31617 | 0.68 | 0.775965 |
Target: 5'- cGGCGUCGGCgccggcGCGGUcgCCGGCGgggGUg -3' miRNA: 3'- cUUGUAGCCGa-----CGUCGa-GGUCGCa--CA- -5' |
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21458 | 5' | -56 | NC_004812.1 | + | 716 | 0.68 | 0.775965 |
Target: 5'- cGGCGUCGGCgccggcGCGGUcgCCGGCGgggGUg -3' miRNA: 3'- cUUGUAGCCGa-----CGUCGa-GGUCGCa--CA- -5' |
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21458 | 5' | -56 | NC_004812.1 | + | 103341 | 0.68 | 0.770268 |
Target: 5'- -cGCG-CGGCUGCAGUucacguacgaccacaUCCAGCGg-- -3' miRNA: 3'- cuUGUaGCCGACGUCG---------------AGGUCGCaca -5' |
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21458 | 5' | -56 | NC_004812.1 | + | 43191 | 0.69 | 0.753887 |
Target: 5'- cGAACGUgCGGUacaggcuggggccgUGCAGCgCCAGCGUc- -3' miRNA: 3'- -CUUGUA-GCCG--------------ACGUCGaGGUCGCAca -5' |
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21458 | 5' | -56 | NC_004812.1 | + | 27210 | 0.69 | 0.747047 |
Target: 5'- cGACG-CGGC-GuCAGCgUCCAGCGUGa -3' miRNA: 3'- cUUGUaGCCGaC-GUCG-AGGUCGCACa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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