miRNA display CGI


Results 21 - 40 of 400 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21461 3' -57.3 NC_004812.1 + 45101 0.66 0.847662
Target:  5'- cGGCGGGCg-GGGGGCGugaguCGggGCGa -3'
miRNA:   3'- uUUGCUCGagCCCCCGCc----GCuuUGUc -5'
21461 3' -57.3 NC_004812.1 + 6339 0.66 0.839617
Target:  5'- aGGAgGGGCagcaGGGGGCGGC-AGGCGc -3'
miRNA:   3'- -UUUgCUCGag--CCCCCGCCGcUUUGUc -5'
21461 3' -57.3 NC_004812.1 + 6466 0.66 0.847662
Target:  5'- -cGCGGGCcCGGGGaGCGggcccuGCGGGuACAGg -3'
miRNA:   3'- uuUGCUCGaGCCCC-CGC------CGCUU-UGUC- -5'
21461 3' -57.3 NC_004812.1 + 25016 0.66 0.863163
Target:  5'- --uCGGGUggCGGGGGuUGGCGAAgaugggcucGCGGu -3'
miRNA:   3'- uuuGCUCGa-GCCCCC-GCCGCUU---------UGUC- -5'
21461 3' -57.3 NC_004812.1 + 123281 0.66 0.847662
Target:  5'- gGGAUGAgaaaccGCagGGGGGCGGgGggGaCGGg -3'
miRNA:   3'- -UUUGCU------CGagCCCCCGCCgCuuU-GUC- -5'
21461 3' -57.3 NC_004812.1 + 5590 0.66 0.847662
Target:  5'- ---aGGGCcaCGGGGGgGGCGggGuccccCAGg -3'
miRNA:   3'- uuugCUCGa-GCCCCCgCCGCuuU-----GUC- -5'
21461 3' -57.3 NC_004812.1 + 121513 0.66 0.863163
Target:  5'- --cCGGGCgccgCGGGGGCgcccucGGCGuccacguGGCGGg -3'
miRNA:   3'- uuuGCUCGa---GCCCCCG------CCGCu------UUGUC- -5'
21461 3' -57.3 NC_004812.1 + 121704 0.66 0.863163
Target:  5'- cGGAgGAGg-CGGaGcGGCGGCGAGAgCAGg -3'
miRNA:   3'- -UUUgCUCgaGCC-C-CCGCCGCUUU-GUC- -5'
21461 3' -57.3 NC_004812.1 + 147795 0.66 0.855513
Target:  5'- --cCGAGgcuCUCGGGGcUGGCGAGGCu- -3'
miRNA:   3'- uuuGCUC---GAGCCCCcGCCGCUUUGuc -5'
21461 3' -57.3 NC_004812.1 + 2319 0.66 0.863163
Target:  5'- aGGACGGGggcaUCGGGGGUcuccGCGGagGACGGg -3'
miRNA:   3'- -UUUGCUCg---AGCCCCCGc---CGCU--UUGUC- -5'
21461 3' -57.3 NC_004812.1 + 77733 0.66 0.863163
Target:  5'- ---gGGGCUCaGGGGGUGGgG--GCGGc -3'
miRNA:   3'- uuugCUCGAG-CCCCCGCCgCuuUGUC- -5'
21461 3' -57.3 NC_004812.1 + 148212 0.66 0.866166
Target:  5'- ---aGGGCUgCGGGGGggccgcuuggguggcCGGCGGggggAGCAGg -3'
miRNA:   3'- uuugCUCGA-GCCCCC---------------GCCGCU----UUGUC- -5'
21461 3' -57.3 NC_004812.1 + 90933 0.66 0.830551
Target:  5'- cGAGCGGGcCUUGGcGGGCGcucucccGCGggGCu- -3'
miRNA:   3'- -UUUGCUC-GAGCC-CCCGC-------CGCuuUGuc -5'
21461 3' -57.3 NC_004812.1 + 146634 0.66 0.863163
Target:  5'- gGAugGAGCUgGGGGuuGuGUGGGugGGg -3'
miRNA:   3'- -UUugCUCGAgCCCCcgC-CGCUUugUC- -5'
21461 3' -57.3 NC_004812.1 + 148919 0.66 0.855513
Target:  5'- cGACGGGCgucCGGcGGcGuCGGCGAcGACGGu -3'
miRNA:   3'- uUUGCUCGa--GCC-CC-C-GCCGCU-UUGUC- -5'
21461 3' -57.3 NC_004812.1 + 43860 0.66 0.842858
Target:  5'- cGAACGAucGCUCGGccaggucgaaccgcaGGGaGGCGgcGCAGg -3'
miRNA:   3'- -UUUGCU--CGAGCC---------------CCCgCCGCuuUGUC- -5'
21461 3' -57.3 NC_004812.1 + 44960 0.66 0.863163
Target:  5'- -cACGAGCgccgaGGGGGCGcGCagGAGGCc- -3'
miRNA:   3'- uuUGCUCGag---CCCCCGC-CG--CUUUGuc -5'
21461 3' -57.3 NC_004812.1 + 50622 0.66 0.862408
Target:  5'- cAGGCGAGCgagaaguUCGGgcuguGGGgGGCGggGCc- -3'
miRNA:   3'- -UUUGCUCG-------AGCC-----CCCgCCGCuuUGuc -5'
21461 3' -57.3 NC_004812.1 + 46262 0.66 0.863163
Target:  5'- --uCGAuCUCGGGGcGCGGCaGGAuccgcGCGGg -3'
miRNA:   3'- uuuGCUcGAGCCCC-CGCCG-CUU-----UGUC- -5'
21461 3' -57.3 NC_004812.1 + 71067 0.66 0.847662
Target:  5'- cGGCG-GUUCGGGcGGC-GCGggGCGu -3'
miRNA:   3'- uUUGCuCGAGCCC-CCGcCGCuuUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.