miRNA display CGI


Results 1 - 20 of 400 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21461 3' -57.3 NC_004812.1 + 120849 0.65 0.868396
Target:  5'- -uACGAcGCcuccccccugCGGGGGCuggcgcuguagcggGGCGggGCGGa -3'
miRNA:   3'- uuUGCU-CGa---------GCCCCCG--------------CCGCuuUGUC- -5'
21461 3' -57.3 NC_004812.1 + 101924 0.66 0.839617
Target:  5'- --uCGGGcCUCGGGGccccggacgcGCGGCGcGGGCGGc -3'
miRNA:   3'- uuuGCUC-GAGCCCC----------CGCCGC-UUUGUC- -5'
21461 3' -57.3 NC_004812.1 + 45101 0.66 0.847662
Target:  5'- cGGCGGGCg-GGGGGCGugaguCGggGCGa -3'
miRNA:   3'- uUUGCUCGagCCCCCGCc----GCuuUGUc -5'
21461 3' -57.3 NC_004812.1 + 71481 0.66 0.847662
Target:  5'- -uGCGGGCgCaGGGGCaGCaGggGCAGc -3'
miRNA:   3'- uuUGCUCGaGcCCCCGcCG-CuuUGUC- -5'
21461 3' -57.3 NC_004812.1 + 98433 0.66 0.831384
Target:  5'- cGGCG-GC-CGcGGGGCGGCaGgcGCGGg -3'
miRNA:   3'- uUUGCuCGaGC-CCCCGCCG-CuuUGUC- -5'
21461 3' -57.3 NC_004812.1 + 5590 0.66 0.847662
Target:  5'- ---aGGGCcaCGGGGGgGGCGggGuccccCAGg -3'
miRNA:   3'- uuugCUCGa-GCCCCCgCCGCuuU-----GUC- -5'
21461 3' -57.3 NC_004812.1 + 116494 0.66 0.839617
Target:  5'- cGGAgGGGC-CGGGGGUcGCG-GACGGa -3'
miRNA:   3'- -UUUgCUCGaGCCCCCGcCGCuUUGUC- -5'
21461 3' -57.3 NC_004812.1 + 109166 0.66 0.839617
Target:  5'- --uCGGGC-CuGGGGCGG-GAGGCGGu -3'
miRNA:   3'- uuuGCUCGaGcCCCCGCCgCUUUGUC- -5'
21461 3' -57.3 NC_004812.1 + 6466 0.66 0.847662
Target:  5'- -cGCGGGCcCGGGGaGCGggcccuGCGGGuACAGg -3'
miRNA:   3'- uuUGCUCGaGCCCC-CGC------CGCUU-UGUC- -5'
21461 3' -57.3 NC_004812.1 + 80613 0.66 0.839617
Target:  5'- ---gGGGCUCGGuGGGgGGUccgcgguggagaGggGCGGg -3'
miRNA:   3'- uuugCUCGAGCC-CCCgCCG------------CuuUGUC- -5'
21461 3' -57.3 NC_004812.1 + 43860 0.66 0.842858
Target:  5'- cGAACGAucGCUCGGccaggucgaaccgcaGGGaGGCGgcGCAGg -3'
miRNA:   3'- -UUUGCU--CGAGCC---------------CCCgCCGCuuUGUC- -5'
21461 3' -57.3 NC_004812.1 + 76506 0.66 0.831384
Target:  5'- --cCGGGCUCa-GGGCGGCGA--CGGu -3'
miRNA:   3'- uuuGCUCGAGccCCCGCCGCUuuGUC- -5'
21461 3' -57.3 NC_004812.1 + 17821 0.66 0.839617
Target:  5'- cGAACGcGCUUGGGGGUcuGGCu-GGCAu -3'
miRNA:   3'- -UUUGCuCGAGCCCCCG--CCGcuUUGUc -5'
21461 3' -57.3 NC_004812.1 + 27773 0.66 0.829715
Target:  5'- gGGGCGGGCggcccagcccgcCGGGGGagagGGCGggGcCGGg -3'
miRNA:   3'- -UUUGCUCGa-----------GCCCCCg---CCGCuuU-GUC- -5'
21461 3' -57.3 NC_004812.1 + 71067 0.66 0.847662
Target:  5'- cGGCG-GUUCGGGcGGC-GCGggGCGu -3'
miRNA:   3'- uUUGCuCGAGCCC-CCGcCGCuuUGUc -5'
21461 3' -57.3 NC_004812.1 + 104561 0.66 0.842858
Target:  5'- uGGGCGAcCUCGGGcgagaucagcucguuGGCGcGCGGAACGa -3'
miRNA:   3'- -UUUGCUcGAGCCC---------------CCGC-CGCUUUGUc -5'
21461 3' -57.3 NC_004812.1 + 109458 0.66 0.831384
Target:  5'- aGGGCG-GCgCGGGGGCGcccGCGGGcuGCGGc -3'
miRNA:   3'- -UUUGCuCGaGCCCCCGC---CGCUU--UGUC- -5'
21461 3' -57.3 NC_004812.1 + 6339 0.66 0.839617
Target:  5'- aGGAgGGGCagcaGGGGGCGGC-AGGCGc -3'
miRNA:   3'- -UUUgCUCGag--CCCCCGCCGcUUUGUc -5'
21461 3' -57.3 NC_004812.1 + 122370 0.66 0.839617
Target:  5'- ---gGGGCgCGGGGcGCGGCGGccccuCGGg -3'
miRNA:   3'- uuugCUCGaGCCCC-CGCCGCUuu---GUC- -5'
21461 3' -57.3 NC_004812.1 + 90933 0.66 0.830551
Target:  5'- cGAGCGGGcCUUGGcGGGCGcucucccGCGggGCu- -3'
miRNA:   3'- -UUUGCUC-GAGCC-CCCGC-------CGCuuUGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.