miRNA display CGI


Results 1 - 20 of 400 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21461 3' -57.3 NC_004812.1 + 156504 0.74 0.400141
Target:  5'- gGGACGGGC-CGGGGcGCGcGCGggGcCGGg -3'
miRNA:   3'- -UUUGCUCGaGCCCC-CGC-CGCuuU-GUC- -5'
21461 3' -57.3 NC_004812.1 + 137978 0.75 0.359105
Target:  5'- gGGGCGGGgUCGGGGGgGGgGggGgGGg -3'
miRNA:   3'- -UUUGCUCgAGCCCCCgCCgCuuUgUC- -5'
21461 3' -57.3 NC_004812.1 + 78552 0.75 0.359105
Target:  5'- cAAGgGGGCUcCGGGGGCuGGCGAucccGCAGc -3'
miRNA:   3'- -UUUgCUCGA-GCCCCCG-CCGCUu---UGUC- -5'
21461 3' -57.3 NC_004812.1 + 100135 0.75 0.375162
Target:  5'- gAGGCGuGGCggCGcGGGCGGCGggGCGGg -3'
miRNA:   3'- -UUUGC-UCGa-GCcCCCGCCGCuuUGUC- -5'
21461 3' -57.3 NC_004812.1 + 5420 0.75 0.38337
Target:  5'- cGGCGGGC-CGGGGGCcccccagaggGGCGGAAgAGg -3'
miRNA:   3'- uUUGCUCGaGCCCCCG----------CCGCUUUgUC- -5'
21461 3' -57.3 NC_004812.1 + 45259 0.74 0.391697
Target:  5'- cGACGAGCUgGGGGGCccGCGggGuCGGc -3'
miRNA:   3'- uUUGCUCGAgCCCCCGc-CGCuuU-GUC- -5'
21461 3' -57.3 NC_004812.1 + 31727 0.74 0.391697
Target:  5'- cGGCGAGCUCGgccgagaggcgcGGGGCGGgGgcGCGGc -3'
miRNA:   3'- uUUGCUCGAGC------------CCCCGCCgCuuUGUC- -5'
21461 3' -57.3 NC_004812.1 + 5008 0.74 0.400141
Target:  5'- ---aGGGCgggCGGGGGCGGCagguGggGCGGc -3'
miRNA:   3'- uuugCUCGa--GCCCCCGCCG----CuuUGUC- -5'
21461 3' -57.3 NC_004812.1 + 94 0.74 0.400141
Target:  5'- gGGACGGGC-CGGGGcGCGcGCGggGcCGGg -3'
miRNA:   3'- -UUUGCUCGaGCCCC-CGC-CGCuuU-GUC- -5'
21461 3' -57.3 NC_004812.1 + 122226 0.75 0.359105
Target:  5'- gGGGCGGGCgCGGGgggcucGGCGGCGggGCGc -3'
miRNA:   3'- -UUUGCUCGaGCCC------CCGCCGCuuUGUc -5'
21461 3' -57.3 NC_004812.1 + 67790 0.75 0.351259
Target:  5'- -cGCGGGCggcuUCGGGGGgGGCGGgcccGGCAGc -3'
miRNA:   3'- uuUGCUCG----AGCCCCCgCCGCU----UUGUC- -5'
21461 3' -57.3 NC_004812.1 + 98705 0.75 0.343535
Target:  5'- --cCGcGC-CGGGGGCGGCGgcGCGGg -3'
miRNA:   3'- uuuGCuCGaGCCCCCGCCGCuuUGUC- -5'
21461 3' -57.3 NC_004812.1 + 130469 0.8 0.194527
Target:  5'- cGGCGGGCggcCGGcGGCGGCGAGGCGGg -3'
miRNA:   3'- uUUGCUCGa--GCCcCCGCCGCUUUGUC- -5'
21461 3' -57.3 NC_004812.1 + 96392 0.79 0.220031
Target:  5'- aGAugGAGUUCGGGaGCGGCGAGGCc- -3'
miRNA:   3'- -UUugCUCGAGCCCcCGCCGCUUUGuc -5'
21461 3' -57.3 NC_004812.1 + 102934 0.79 0.225462
Target:  5'- cGAACGAGagccgCGGGGGUGGCGggGgGGc -3'
miRNA:   3'- -UUUGCUCga---GCCCCCGCCGCuuUgUC- -5'
21461 3' -57.3 NC_004812.1 + 129735 0.78 0.231007
Target:  5'- --uCGGGC-CGGGGGCGGCGGcGGCGGc -3'
miRNA:   3'- uuuGCUCGaGCCCCCGCCGCU-UUGUC- -5'
21461 3' -57.3 NC_004812.1 + 98087 0.78 0.248333
Target:  5'- --cCGGGCuaUCGGGGGCGGgGAGaACAGg -3'
miRNA:   3'- uuuGCUCG--AGCCCCCGCCgCUU-UGUC- -5'
21461 3' -57.3 NC_004812.1 + 105466 0.77 0.273089
Target:  5'- gGAGCGAGgaCGGGGaGCGGaggaCGGAGCAGg -3'
miRNA:   3'- -UUUGCUCgaGCCCC-CGCC----GCUUUGUC- -5'
21461 3' -57.3 NC_004812.1 + 20279 0.76 0.321103
Target:  5'- aGGACGAGgUCGGGGGUgGGCGgcGCGc -3'
miRNA:   3'- -UUUGCUCgAGCCCCCG-CCGCuuUGUc -5'
21461 3' -57.3 NC_004812.1 + 71140 0.75 0.343535
Target:  5'- ---gGGGUUCGGGGGCGcGCGAGuucgucgggggGCAGg -3'
miRNA:   3'- uuugCUCGAGCCCCCGC-CGCUU-----------UGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.