miRNA display CGI


Results 1 - 20 of 400 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21461 3' -57.3 NC_004812.1 + 84526 1.05 0.003663
Target:  5'- cAAACGAGCUCGGGGGCGGCGAAACAGc -3'
miRNA:   3'- -UUUGCUCGAGCCCCCGCCGCUUUGUC- -5'
21461 3' -57.3 NC_004812.1 + 4226 0.87 0.063539
Target:  5'- --uCGGGCUCGGGGGCGGCGGcGGCGGc -3'
miRNA:   3'- uuuGCUCGAGCCCCCGCCGCU-UUGUC- -5'
21461 3' -57.3 NC_004812.1 + 91194 0.84 0.094721
Target:  5'- -cGCGGGCUCGGGGGCGGgGGGcGCGGc -3'
miRNA:   3'- uuUGCUCGAGCCCCCGCCgCUU-UGUC- -5'
21461 3' -57.3 NC_004812.1 + 98053 0.82 0.147387
Target:  5'- cGGGCGccGGCUCGGGGGCGGcCGGAGcCGGg -3'
miRNA:   3'- -UUUGC--UCGAGCCCCCGCC-GCUUU-GUC- -5'
21461 3' -57.3 NC_004812.1 + 145036 0.81 0.163188
Target:  5'- cGGCGAGCgcggaggCGGGGGCGGCG--GCGGa -3'
miRNA:   3'- uUUGCUCGa------GCCCCCGCCGCuuUGUC- -5'
21461 3' -57.3 NC_004812.1 + 147496 0.81 0.163188
Target:  5'- cGACGGGCggcgaGGGGGaCGGCGAGGCGGc -3'
miRNA:   3'- uUUGCUCGag---CCCCC-GCCGCUUUGUC- -5'
21461 3' -57.3 NC_004812.1 + 10715 0.8 0.176023
Target:  5'- -cACGGGCUCcagggggaGGGGCGGCGggGCGGc -3'
miRNA:   3'- uuUGCUCGAGc-------CCCCGCCGCuuUGUC- -5'
21461 3' -57.3 NC_004812.1 + 130469 0.8 0.194527
Target:  5'- cGGCGGGCggcCGGcGGCGGCGAGGCGGg -3'
miRNA:   3'- uUUGCUCGa--GCCcCCGCCGCUUUGUC- -5'
21461 3' -57.3 NC_004812.1 + 4961 0.8 0.194527
Target:  5'- cGGCGGGCggcCGGcGGCGGCGAGGCGGg -3'
miRNA:   3'- uUUGCUCGa--GCCcCCGCCGCUUUGUC- -5'
21461 3' -57.3 NC_004812.1 + 44199 0.8 0.194527
Target:  5'- gGGugGGGCUCGGcGGCGGCGcGGACGGg -3'
miRNA:   3'- -UUugCUCGAGCCcCCGCCGC-UUUGUC- -5'
21461 3' -57.3 NC_004812.1 + 67307 0.79 0.214712
Target:  5'- gGAGCGGGCUCGGGGa-GGCGAGcGCGGg -3'
miRNA:   3'- -UUUGCUCGAGCCCCcgCCGCUU-UGUC- -5'
21461 3' -57.3 NC_004812.1 + 96392 0.79 0.220031
Target:  5'- aGAugGAGUUCGGGaGCGGCGAGGCc- -3'
miRNA:   3'- -UUugCUCGAGCCCcCGCCGCUUUGuc -5'
21461 3' -57.3 NC_004812.1 + 138306 0.79 0.220031
Target:  5'- cGGCGGGCUCGGaGGGUGGCGccggcGCGGa -3'
miRNA:   3'- uUUGCUCGAGCC-CCCGCCGCuu---UGUC- -5'
21461 3' -57.3 NC_004812.1 + 102934 0.79 0.225462
Target:  5'- cGAACGAGagccgCGGGGGUGGCGggGgGGc -3'
miRNA:   3'- -UUUGCUCga---GCCCCCGCCGCuuUgUC- -5'
21461 3' -57.3 NC_004812.1 + 129735 0.78 0.231007
Target:  5'- --uCGGGC-CGGGGGCGGCGGcGGCGGc -3'
miRNA:   3'- uuuGCUCGaGCCCCCGCCGCU-UUGUC- -5'
21461 3' -57.3 NC_004812.1 + 98087 0.78 0.248333
Target:  5'- --cCGGGCuaUCGGGGGCGGgGAGaACAGg -3'
miRNA:   3'- uuuGCUCG--AGCCCCCGCCgCUU-UGUC- -5'
21461 3' -57.3 NC_004812.1 + 105466 0.77 0.273089
Target:  5'- gGAGCGAGgaCGGGGaGCGGaggaCGGAGCAGg -3'
miRNA:   3'- -UUUGCUCgaGCCCC-CGCC----GCUUUGUC- -5'
21461 3' -57.3 NC_004812.1 + 145806 0.77 0.286192
Target:  5'- --uCGGGCUCGGuguGGGCGGCGggGuCGGc -3'
miRNA:   3'- uuuGCUCGAGCC---CCCGCCGCuuU-GUC- -5'
21461 3' -57.3 NC_004812.1 + 20279 0.76 0.321103
Target:  5'- aGGACGAGgUCGGGGGUgGGCGgcGCGc -3'
miRNA:   3'- -UUUGCUCgAGCCCCCG-CCGCuuUGUc -5'
21461 3' -57.3 NC_004812.1 + 11914 0.76 0.328457
Target:  5'- cGAugGGGUggggGuGGGGCGGCGggGCGGg -3'
miRNA:   3'- -UUugCUCGag--C-CCCCGCCGCuuUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.