miRNA display CGI


Results 1 - 20 of 400 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21461 3' -57.3 NC_004812.1 + 45 0.73 0.471655
Target:  5'- cGGCGGGCcgCGGGcGCGGCGgcGCGGc -3'
miRNA:   3'- uUUGCUCGa-GCCCcCGCCGCuuUGUC- -5'
21461 3' -57.3 NC_004812.1 + 94 0.74 0.400141
Target:  5'- gGGACGGGC-CGGGGcGCGcGCGggGcCGGg -3'
miRNA:   3'- -UUUGCUCGaGCCCC-CGC-CGCuuU-GUC- -5'
21461 3' -57.3 NC_004812.1 + 740 0.74 0.417373
Target:  5'- cGGCGGGggUGGGGGCGGCGcGACc- -3'
miRNA:   3'- uUUGCUCgaGCCCCCGCCGCuUUGuc -5'
21461 3' -57.3 NC_004812.1 + 1203 0.73 0.481049
Target:  5'- -uAUGuAGCUcggcCGGGGGCGGCGccGCGGg -3'
miRNA:   3'- uuUGC-UCGA----GCCCCCGCCGCuuUGUC- -5'
21461 3' -57.3 NC_004812.1 + 1470 0.72 0.539157
Target:  5'- cGACGccGGCguccucggCGGGcGGCGGCGGAGCGc -3'
miRNA:   3'- uUUGC--UCGa-------GCCC-CCGCCGCUUUGUc -5'
21461 3' -57.3 NC_004812.1 + 2033 0.71 0.579194
Target:  5'- cGGCGGGcCUCGGucGGCGGCGGGgggcGCGGg -3'
miRNA:   3'- uUUGCUC-GAGCCc-CCGCCGCUU----UGUC- -5'
21461 3' -57.3 NC_004812.1 + 2319 0.66 0.863163
Target:  5'- aGGACGGGggcaUCGGGGGUcuccGCGGagGACGGg -3'
miRNA:   3'- -UUUGCUCg---AGCCCCCGc---CGCU--UUGUC- -5'
21461 3' -57.3 NC_004812.1 + 2877 0.68 0.730747
Target:  5'- gAGGCGgcGGC-CGGcGGCGGCGGcgAGCAGg -3'
miRNA:   3'- -UUUGC--UCGaGCCcCCGCCGCU--UUGUC- -5'
21461 3' -57.3 NC_004812.1 + 3062 0.73 0.480106
Target:  5'- aGGACGAcagccucGC-CGGuGGGCGGCGGGACGa -3'
miRNA:   3'- -UUUGCU-------CGaGCC-CCCGCCGCUUUGUc -5'
21461 3' -57.3 NC_004812.1 + 3093 0.67 0.787677
Target:  5'- cAGGCGGGCggggCGGGGGaGGCGccGCc- -3'
miRNA:   3'- -UUUGCUCGa---GCCCCCgCCGCuuUGuc -5'
21461 3' -57.3 NC_004812.1 + 3251 0.69 0.694997
Target:  5'- gGAGcCGGGCUCGGGcgggccgcagcgcgcGGCGaGCGAGGcCAGc -3'
miRNA:   3'- -UUU-GCUCGAGCCC---------------CCGC-CGCUUU-GUC- -5'
21461 3' -57.3 NC_004812.1 + 3507 0.7 0.640228
Target:  5'- -cGCGGGCcCGGGgccGGCGGCcccgGggGCGGg -3'
miRNA:   3'- uuUGCUCGaGCCC---CCGCCG----CuuUGUC- -5'
21461 3' -57.3 NC_004812.1 + 3572 0.72 0.509757
Target:  5'- cGGCGGGCaggCGGcGGCGGCGGcgGGCGGg -3'
miRNA:   3'- uUUGCUCGa--GCCcCCGCCGCU--UUGUC- -5'
21461 3' -57.3 NC_004812.1 + 3700 0.66 0.855513
Target:  5'- ---aGAGCaggUCGGcGGCGGCGGcgccGGCGGa -3'
miRNA:   3'- uuugCUCG---AGCCcCCGCCGCU----UUGUC- -5'
21461 3' -57.3 NC_004812.1 + 3903 0.71 0.559075
Target:  5'- -cGCGGGCgcggCGGcGcGGCGGCGggGCc- -3'
miRNA:   3'- uuUGCUCGa---GCC-C-CCGCCGCuuUGuc -5'
21461 3' -57.3 NC_004812.1 + 4226 0.87 0.063539
Target:  5'- --uCGGGCUCGGGGGCGGCGGcGGCGGc -3'
miRNA:   3'- uuuGCUCGAGCCCCCGCCGCU-UUGUC- -5'
21461 3' -57.3 NC_004812.1 + 4347 0.68 0.769161
Target:  5'- cGugGuGCUCGuGGGGCGcGCGugcAACAu -3'
miRNA:   3'- uUugCuCGAGC-CCCCGC-CGCu--UUGUc -5'
21461 3' -57.3 NC_004812.1 + 4613 0.73 0.462354
Target:  5'- ---gGGGCUCGgguggcccuuaGGGGCGGgGggGCGGg -3'
miRNA:   3'- uuugCUCGAGC-----------CCCCGCCgCuuUGUC- -5'
21461 3' -57.3 NC_004812.1 + 4741 0.72 0.539157
Target:  5'- -cACGcGCccCGGGGGCGGCGGcuCGGc -3'
miRNA:   3'- uuUGCuCGa-GCCCCCGCCGCUuuGUC- -5'
21461 3' -57.3 NC_004812.1 + 4770 0.74 0.4087
Target:  5'- gAGACGGGCgcggUGGGGGagggGGCGggGCGa -3'
miRNA:   3'- -UUUGCUCGa---GCCCCCg---CCGCuuUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.