Results 41 - 60 of 400 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21461 | 3' | -57.3 | NC_004812.1 | + | 133570 | 0.66 | 0.847662 |
Target: 5'- --uCGAGCUCGGcGgcguccugccGGCGGCGGuAGCGc -3' miRNA: 3'- uuuGCUCGAGCC-C----------CCGCCGCU-UUGUc -5' |
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21461 | 3' | -57.3 | NC_004812.1 | + | 122203 | 0.66 | 0.847662 |
Target: 5'- cGACGGGCcaCGaaagaaGGGGCG-CGAGACGGg -3' miRNA: 3'- uUUGCUCGa-GC------CCCCGCcGCUUUGUC- -5' |
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21461 | 3' | -57.3 | NC_004812.1 | + | 36491 | 0.66 | 0.847662 |
Target: 5'- ---aGGGCcaCGGGGGgGGCGggGuccccCAGg -3' miRNA: 3'- uuugCUCGa-GCCCCCgCCGCuuU-----GUC- -5' |
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21461 | 3' | -57.3 | NC_004812.1 | + | 37367 | 0.66 | 0.847662 |
Target: 5'- -cGCGGGCcCGGGGaGCGggcccuGCGGGuACAGg -3' miRNA: 3'- uuUGCUCGaGCCCC-CGC------CGCUU-UGUC- -5' |
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21461 | 3' | -57.3 | NC_004812.1 | + | 85317 | 0.66 | 0.847662 |
Target: 5'- cGGgGGGCUCGGuggcgccuGGCGGCGAcuuucGGCGGc -3' miRNA: 3'- uUUgCUCGAGCCc-------CCGCCGCU-----UUGUC- -5' |
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21461 | 3' | -57.3 | NC_004812.1 | + | 154182 | 0.66 | 0.847662 |
Target: 5'- gGGAUGAgaaaccGCagGGGGGCGGgGggGaCGGg -3' miRNA: 3'- -UUUGCU------CGagCCCCCGCCgCuuU-GUC- -5' |
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21461 | 3' | -57.3 | NC_004812.1 | + | 71067 | 0.66 | 0.847662 |
Target: 5'- cGGCG-GUUCGGGcGGC-GCGggGCGu -3' miRNA: 3'- uUUGCuCGAGCCC-CCGcCGCuuUGUc -5' |
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21461 | 3' | -57.3 | NC_004812.1 | + | 104561 | 0.66 | 0.842858 |
Target: 5'- uGGGCGAcCUCGGGcgagaucagcucguuGGCGcGCGGAACGa -3' miRNA: 3'- -UUUGCUcGAGCCC---------------CCGC-CGCUUUGUc -5' |
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21461 | 3' | -57.3 | NC_004812.1 | + | 43860 | 0.66 | 0.842858 |
Target: 5'- cGAACGAucGCUCGGccaggucgaaccgcaGGGaGGCGgcGCAGg -3' miRNA: 3'- -UUUGCU--CGAGCC---------------CCCgCCGCuuUGUC- -5' |
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21461 | 3' | -57.3 | NC_004812.1 | + | 47524 | 0.66 | 0.839617 |
Target: 5'- uGGCcGGCcaggCGGGGGgGGCuGAAGCAc -3' miRNA: 3'- uUUGcUCGa---GCCCCCgCCG-CUUUGUc -5' |
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21461 | 3' | -57.3 | NC_004812.1 | + | 15686 | 0.66 | 0.839617 |
Target: 5'- cAAACGGGCguuccCGcGGGCGGCaGguACGGg -3' miRNA: 3'- -UUUGCUCGa----GCcCCCGCCG-CuuUGUC- -5' |
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21461 | 3' | -57.3 | NC_004812.1 | + | 153271 | 0.66 | 0.839617 |
Target: 5'- ---gGGGCgCGGGGcGCGGCGGccccuCGGg -3' miRNA: 3'- uuugCUCGaGCCCC-CGCCGCUuu---GUC- -5' |
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21461 | 3' | -57.3 | NC_004812.1 | + | 120637 | 0.66 | 0.839617 |
Target: 5'- gAGACGGGCUCGGcGGugucaaCGGCGA--CGGc -3' miRNA: 3'- -UUUGCUCGAGCC-CCc-----GCCGCUuuGUC- -5' |
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21461 | 3' | -57.3 | NC_004812.1 | + | 122370 | 0.66 | 0.839617 |
Target: 5'- ---gGGGCgCGGGGcGCGGCGGccccuCGGg -3' miRNA: 3'- uuugCUCGaGCCCC-CGCCGCUuu---GUC- -5' |
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21461 | 3' | -57.3 | NC_004812.1 | + | 109166 | 0.66 | 0.839617 |
Target: 5'- --uCGGGC-CuGGGGCGG-GAGGCGGu -3' miRNA: 3'- uuuGCUCGaGcCCCCGCCgCUUUGUC- -5' |
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21461 | 3' | -57.3 | NC_004812.1 | + | 80613 | 0.66 | 0.839617 |
Target: 5'- ---gGGGCUCGGuGGGgGGUccgcgguggagaGggGCGGg -3' miRNA: 3'- uuugCUCGAGCC-CCCgCCG------------CuuUGUC- -5' |
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21461 | 3' | -57.3 | NC_004812.1 | + | 87128 | 0.66 | 0.839617 |
Target: 5'- --cUGGGUUCGGcGGCGGCGcgcCAGg -3' miRNA: 3'- uuuGCUCGAGCCcCCGCCGCuuuGUC- -5' |
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21461 | 3' | -57.3 | NC_004812.1 | + | 17821 | 0.66 | 0.839617 |
Target: 5'- cGAACGcGCUUGGGGGUcuGGCu-GGCAu -3' miRNA: 3'- -UUUGCuCGAGCCCCCG--CCGcuUUGUc -5' |
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21461 | 3' | -57.3 | NC_004812.1 | + | 116494 | 0.66 | 0.839617 |
Target: 5'- cGGAgGGGC-CGGGGGUcGCG-GACGGa -3' miRNA: 3'- -UUUgCUCGaGCCCCCGcCGCuUUGUC- -5' |
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21461 | 3' | -57.3 | NC_004812.1 | + | 101924 | 0.66 | 0.839617 |
Target: 5'- --uCGGGcCUCGGGGccccggacgcGCGGCGcGGGCGGc -3' miRNA: 3'- uuuGCUC-GAGCCCC----------CGCCGC-UUUGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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