Results 21 - 40 of 1308 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21461 | 5' | -69.2 | NC_004812.1 | + | 67492 | 0.66 | 0.377111 |
Target: 5'- gCUGGCGCCCgCGgGCCgUCGUCUCg -3' miRNA: 3'- gGGUCGCGGGgGCgUGGgGGCGGGGg -5' |
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21461 | 5' | -69.2 | NC_004812.1 | + | 109085 | 0.66 | 0.355254 |
Target: 5'- uUCAGCccCCCCCGCcuggccggccACCUCCGCgCCg -3' miRNA: 3'- gGGUCGc-GGGGGCG----------UGGGGGCGgGGg -5' |
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21461 | 5' | -69.2 | NC_004812.1 | + | 64481 | 0.66 | 0.355254 |
Target: 5'- -gCAGaucCGCUCCCGCAUCCCCcagaGCaCgCCCg -3' miRNA: 3'- ggGUC---GCGGGGGCGUGGGGG----CG-G-GGG- -5' |
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21461 | 5' | -69.2 | NC_004812.1 | + | 107016 | 0.66 | 0.399855 |
Target: 5'- gCCGauGCGCgCCUGCugCgCCagcaGCCCCa -3' miRNA: 3'- gGGU--CGCGgGGGCGugG-GGg---CGGGGg -5' |
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21461 | 5' | -69.2 | NC_004812.1 | + | 44616 | 0.66 | 0.36244 |
Target: 5'- gCCC-GCGUCCUCGUggggauaccggGCCgCCCGCCUg- -3' miRNA: 3'- -GGGuCGCGGGGGCG-----------UGG-GGGCGGGgg -5' |
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21461 | 5' | -69.2 | NC_004812.1 | + | 67656 | 0.66 | 0.36244 |
Target: 5'- cCCUGGcCGCCggCCGCGCCCUccuCGCCaCCg -3' miRNA: 3'- -GGGUC-GCGGg-GGCGUGGGG---GCGGgGG- -5' |
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21461 | 5' | -69.2 | NC_004812.1 | + | 105701 | 0.66 | 0.369726 |
Target: 5'- gCgGGCGUUCCC-CACCa-CGCCCCUu -3' miRNA: 3'- gGgUCGCGGGGGcGUGGggGCGGGGG- -5' |
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21461 | 5' | -69.2 | NC_004812.1 | + | 6306 | 0.66 | 0.36244 |
Target: 5'- -gCGGCGCCCCCGgGCa--CGCggggggCCCCg -3' miRNA: 3'- ggGUCGCGGGGGCgUGgggGCG------GGGG- -5' |
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21461 | 5' | -69.2 | NC_004812.1 | + | 81444 | 0.66 | 0.374885 |
Target: 5'- gCCCAGgGCCCCagGCGaucgggggccuCCCCgacgacggcguacaCGCgCCCCc -3' miRNA: 3'- -GGGUCgCGGGGg-CGU-----------GGGG--------------GCG-GGGG- -5' |
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21461 | 5' | -69.2 | NC_004812.1 | + | 23527 | 0.66 | 0.377111 |
Target: 5'- gCUGGgGCCCCacgucgGCGCCaucgCCGCCgCCg -3' miRNA: 3'- gGGUCgCGGGGg-----CGUGGg---GGCGGgGG- -5' |
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21461 | 5' | -69.2 | NC_004812.1 | + | 49009 | 0.66 | 0.358117 |
Target: 5'- cCCCGGCggccggGCCCaCgcggacgaggucaacCGCGCCgCCGCCgCCu -3' miRNA: 3'- -GGGUCG------CGGG-G---------------GCGUGGgGGCGGgGG- -5' |
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21461 | 5' | -69.2 | NC_004812.1 | + | 144011 | 0.66 | 0.377111 |
Target: 5'- uUCguGUGUCCCCgGCACCCgCCGgaucgcucguuuCCCgCCa -3' miRNA: 3'- -GGguCGCGGGGG-CGUGGG-GGC------------GGG-GG- -5' |
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21461 | 5' | -69.2 | NC_004812.1 | + | 80880 | 0.66 | 0.374885 |
Target: 5'- cCCCAgGCGCCCagguCGCgccggcucgugagaACCgaCCUGCCCuCCg -3' miRNA: 3'- -GGGU-CGCGGGg---GCG--------------UGG--GGGCGGG-GG- -5' |
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21461 | 5' | -69.2 | NC_004812.1 | + | 92821 | 0.66 | 0.36244 |
Target: 5'- gCCCuGCGCgCCgGCcaguACCCCgGCCUg- -3' miRNA: 3'- -GGGuCGCGgGGgCG----UGGGGgCGGGgg -5' |
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21461 | 5' | -69.2 | NC_004812.1 | + | 139435 | 0.66 | 0.361717 |
Target: 5'- gCCGGUGCuggCCCUGUcCCCUCGgacgccacgacucCCCCCg -3' miRNA: 3'- gGGUCGCG---GGGGCGuGGGGGC-------------GGGGG- -5' |
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21461 | 5' | -69.2 | NC_004812.1 | + | 95716 | 0.66 | 0.36244 |
Target: 5'- gCC-GCGCCCcaCCGCcgACUUCCGCCUgCa -3' miRNA: 3'- gGGuCGCGGG--GGCG--UGGGGGCGGGgG- -5' |
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21461 | 5' | -69.2 | NC_004812.1 | + | 146018 | 0.66 | 0.355254 |
Target: 5'- gUCGGCGCUCCgcggCGCAUaaaUGCCCCCg -3' miRNA: 3'- gGGUCGCGGGG----GCGUGgggGCGGGGG- -5' |
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21461 | 5' | -69.2 | NC_004812.1 | + | 101299 | 0.66 | 0.355254 |
Target: 5'- cCCgGGCGUCggCCCGCGCCga-GCCCaCCu -3' miRNA: 3'- -GGgUCGCGG--GGGCGUGGgggCGGG-GG- -5' |
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21461 | 5' | -69.2 | NC_004812.1 | + | 47535 | 0.66 | 0.377111 |
Target: 5'- cUCCAGgGCCUgucgaCGUACgCCgUGCCCCUc -3' miRNA: 3'- -GGGUCgCGGGg----GCGUG-GGgGCGGGGG- -5' |
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21461 | 5' | -69.2 | NC_004812.1 | + | 30634 | 0.66 | 0.355968 |
Target: 5'- -aCAGCGCCCCCGUcagggccgucacgcaGCggaauaucuugauuCgCUCGUCCCCg -3' miRNA: 3'- ggGUCGCGGGGGCG---------------UG--------------G-GGGCGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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