miRNA display CGI

Results 1 - 20 of 1308 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21461	5'	-69.2	NC_004812.1	+	64481	0.66	0.355254
	Target:  5'- -gCAGaucCGCUCCCGCAUCCCCcagaGCaCgCCCg -3' miRNA:   3'- ggGUC---GCGGGGGCGUGGGGG----CG-G-GGG- -5'
21461	5'	-69.2	NC_004812.1	+	8751	0.66	0.354542
	Target:  5'- cCCgGGCGCgCCgcacacaccaccaCCGcCACCCCCcccacuccgGCCUCCu -3' miRNA:   3'- -GGgUCGCG-GG-------------GGC-GUGGGGG---------CGGGGG- -5'
21461	5'	-69.2	NC_004812.1	+	18673	0.66	0.36244
	Target:  5'- uCCaCGGCGCCCgCCGCcUUCUCGagCCCg -3' miRNA:   3'- -GG-GUCGCGGG-GGCGuGGGGGCggGGG- -5'
21461	5'	-69.2	NC_004812.1	+	139435	0.66	0.361717
	Target:  5'- gCCGGUGCuggCCCUGUcCCCUCGgacgccacgacucCCCCCg -3' miRNA:   3'- gGGUCGCG---GGGGCGuGGGGGC-------------GGGGG- -5'
21461	5'	-69.2	NC_004812.1	+	111149	0.66	0.355254
	Target:  5'- gCCguGCGCUCCCuccgGCACCUcaCCaCCCUCu -3' miRNA:   3'- -GGguCGCGGGGG----CGUGGG--GGcGGGGG- -5'
21461	5'	-69.2	NC_004812.1	+	33890	0.66	0.355254
	Target:  5'- gCCAGgacucgGCCgUCGCgaucGCCgCCCGCCUCCa -3' miRNA:   3'- gGGUCg-----CGGgGGCG----UGG-GGGCGGGGG- -5'
21461	5'	-69.2	NC_004812.1	+	107016	0.66	0.399855
	Target:  5'- gCCGauGCGCgCCUGCugCgCCagcaGCCCCa -3' miRNA:   3'- gGGU--CGCGgGGGCGugG-GGg---CGGGGg -5'
21461	5'	-69.2	NC_004812.1	+	101299	0.66	0.355254
	Target:  5'- cCCgGGCGUCggCCCGCGCCga-GCCCaCCu -3' miRNA:   3'- -GGgUCGCGG--GGGCGUGGgggCGGG-GG- -5'
21461	5'	-69.2	NC_004812.1	+	30634	0.66	0.355968
	Target:  5'- -aCAGCGCCCCCGUcagggccgucacgcaGCggaauaucuugauuCgCUCGUCCCCg -3' miRNA:   3'- ggGUCGCGGGGGCG---------------UG--------------G-GGGCGGGGG- -5'
21461	5'	-69.2	NC_004812.1	+	146018	0.66	0.355254
	Target:  5'- gUCGGCGCUCCgcggCGCAUaaaUGCCCCCg -3' miRNA:   3'- gGGUCGCGGGG----GCGUGgggGCGGGGG- -5'
21461	5'	-69.2	NC_004812.1	+	67656	0.66	0.36244
	Target:  5'- cCCUGGcCGCCggCCGCGCCCUccuCGCCaCCg -3' miRNA:   3'- -GGGUC-GCGGg-GGCGUGGGG---GCGGgGG- -5'
21461	5'	-69.2	NC_004812.1	+	75270	0.66	0.355254
	Target:  5'- aCCAGCGCgUCCuuGgCCUCGCCCa- -3' miRNA:   3'- gGGUCGCGgGGGcgUgGGGGCGGGgg -5'
21461	5'	-69.2	NC_004812.1	+	278	0.66	0.355254
	Target:  5'- uCCCGcGCGCgCUCCGcCGCCguccggCCGCgCCCg -3' miRNA:   3'- -GGGU-CGCG-GGGGC-GUGGg-----GGCGgGGG- -5'
21461	5'	-69.2	NC_004812.1	+	95716	0.66	0.36244
	Target:  5'- gCC-GCGCCCcaCCGCcgACUUCCGCCUgCa -3' miRNA:   3'- gGGuCGCGGG--GGCG--UGGGGGCGGGgG- -5'
21461	5'	-69.2	NC_004812.1	+	49009	0.66	0.358117
	Target:  5'- cCCCGGCggccggGCCCaCgcggacgaggucaacCGCGCCgCCGCCgCCu -3' miRNA:   3'- -GGGUCG------CGGG-G---------------GCGUGGgGGCGGgGG- -5'
21461	5'	-69.2	NC_004812.1	+	44616	0.66	0.36244
	Target:  5'- gCCC-GCGUCCUCGUggggauaccggGCCgCCCGCCUg- -3' miRNA:   3'- -GGGuCGCGGGGGCG-----------UGG-GGGCGGGgg -5'
21461	5'	-69.2	NC_004812.1	+	14780	0.66	0.36244
	Target:  5'- gCUcGCGUCCCCGCcgACCCgCGCCa-- -3' miRNA:   3'- gGGuCGCGGGGGCG--UGGGgGCGGggg -5'
21461	5'	-69.2	NC_004812.1	+	142374	0.66	0.353119
	Target:  5'- uCCCGGgGUgggaCCUCGCACCggggauaaagggcgCCCGgCCCUg -3' miRNA:   3'- -GGGUCgCG----GGGGCGUGG--------------GGGCgGGGG- -5'
21461	5'	-69.2	NC_004812.1	+	90353	0.66	0.355254
	Target:  5'- aCCUGuaGCCuCUCGUuuuCCCaUCGCCCCCa -3' miRNA:   3'- -GGGUcgCGG-GGGCGu--GGG-GGCGGGGG- -5'
21461	5'	-69.2	NC_004812.1	+	109085	0.66	0.355254
	Target:  5'- uUCAGCccCCCCCGCcuggccggccACCUCCGCgCCg -3' miRNA:   3'- gGGUCGc-GGGGGCG----------UGGGGGCGgGGg -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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