miRNA display CGI


Results 1 - 20 of 1308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21461 5' -69.2 NC_004812.1 + 117456 0.84 0.021604
Target:  5'- cCCCGGCGCCCCCGggggcggACCCCCGgCCCg -3'
miRNA:   3'- -GGGUCGCGGGGGCg------UGGGGGCgGGGg -5'
21461 5' -69.2 NC_004812.1 + 139231 0.85 0.01683
Target:  5'- aCCCc-CGCCCCCaccacCACCCCCGCCCCCa -3'
miRNA:   3'- -GGGucGCGGGGGc----GUGGGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 139267 0.85 0.01683
Target:  5'- aCCCc-CGCCCCCaccacCACCCCCGCCCCCa -3'
miRNA:   3'- -GGGucGCGGGGGc----GUGGGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 380 0.85 0.017692
Target:  5'- gCCGGCGCaUCCCGCgGCgCCCCGCCCCCc -3'
miRNA:   3'- gGGUCGCG-GGGGCG-UG-GGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 3931 0.84 0.018599
Target:  5'- gCCCaAGCgGCCCUCGCuGCCCCCGCCuCCCg -3'
miRNA:   3'- -GGG-UCG-CGGGGGCG-UGGGGGCGG-GGG- -5'
21461 5' -69.2 NC_004812.1 + 119815 0.84 0.019069
Target:  5'- gCCCGGCgGCCccugagCCCGCGCCCgCGCCCCCc -3'
miRNA:   3'- -GGGUCG-CGG------GGGCGUGGGgGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 69536 0.84 0.019551
Target:  5'- gUCCGGCcgccCCCCCGCGCCCCUGCCCgCg -3'
miRNA:   3'- -GGGUCGc---GGGGGCGUGGGGGCGGGgG- -5'
21461 5' -69.2 NC_004812.1 + 117321 0.84 0.020552
Target:  5'- cCCCGccGCGCCCCCGgACCCCgGgCCCCg -3'
miRNA:   3'- -GGGU--CGCGGGGGCgUGGGGgCgGGGG- -5'
21461 5' -69.2 NC_004812.1 + 119594 0.84 0.021071
Target:  5'- cCCCGGCaGCCCgCCGCcgucGCCCCCGUUCCCg -3'
miRNA:   3'- -GGGUCG-CGGG-GGCG----UGGGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 139195 0.85 0.01683
Target:  5'- aCCCc-CGCCCCCaccacCACCCCCGCCCCCa -3'
miRNA:   3'- -GGGucGCGGGGGc----GUGGGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 3156 0.85 0.016009
Target:  5'- cCCCuccGCcccCCCCCGCGcCCCCCGCCCCCg -3'
miRNA:   3'- -GGGu--CGc--GGGGGCGU-GGGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 156563 0.85 0.016009
Target:  5'- gCCCAaacGCGCCCCCccgaacgaACCCCCGCCCCCc -3'
miRNA:   3'- -GGGU---CGCGGGGGcg------UGGGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 119983 0.9 0.007546
Target:  5'- gCCCGGCGCCcuccuCCCGCggcagACCCCCGCCCCCc -3'
miRNA:   3'- -GGGUCGCGG-----GGGCG-----UGGGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 143238 0.88 0.010198
Target:  5'- cCCCGGCGCggaagggaCCgCCGCACCCCCGaCCCCCg -3'
miRNA:   3'- -GGGUCGCG--------GG-GGCGUGGGGGC-GGGGG- -5'
21461 5' -69.2 NC_004812.1 + 126188 0.88 0.010457
Target:  5'- cCCCGGCGCUCCCGCGgCCCgGCCUCCu -3'
miRNA:   3'- -GGGUCGCGGGGGCGUgGGGgCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 132465 0.87 0.011274
Target:  5'- cCCCGuuucGCGCCCCCccuuccccCACCCCCGCCCCCa -3'
miRNA:   3'- -GGGU----CGCGGGGGc-------GUGGGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 3430 0.87 0.011532
Target:  5'- cUCCGGCGCCgCCGCGCCCCCcgugguccccgugGCCCCCc -3'
miRNA:   3'- -GGGUCGCGGgGGCGUGGGGG-------------CGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 3344 0.86 0.014126
Target:  5'- gCCGcCGCgCCCCGCGCCCCgGCCCCCg -3'
miRNA:   3'- gGGUcGCG-GGGGCGUGGGGgCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 118028 0.86 0.014851
Target:  5'- cCCCcGCGCCCgCC-CACCCCCGCUCCCg -3'
miRNA:   3'- -GGGuCGCGGG-GGcGUGGGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 153 0.85 0.016009
Target:  5'- gCCCAaacGCGCCCCCccgaacgaACCCCCGCCCCCc -3'
miRNA:   3'- -GGGU---CGCGGGGGcg------UGGGGGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.