miRNA display CGI


Results 1 - 20 of 1308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21461 5' -69.2 NC_004812.1 + 100 0.76 0.085737
Target:  5'- uCCCGGC-CCCgCGCGCgCCCCGgCCCg -3'
miRNA:   3'- -GGGUCGcGGGgGCGUG-GGGGCgGGGg -5'
21461 5' -69.2 NC_004812.1 + 152 0.76 0.085737
Target:  5'- gCC-GCGCCgCCGCGCCCgCgGCCCgCCg -3'
miRNA:   3'- gGGuCGCGGgGGCGUGGG-GgCGGG-GG- -5'
21461 5' -69.2 NC_004812.1 + 153 0.85 0.016009
Target:  5'- gCCCAaacGCGCCCCCccgaacgaACCCCCGCCCCCc -3'
miRNA:   3'- -GGGU---CGCGGGGGcg------UGGGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 226 0.67 0.341187
Target:  5'- gCCCAagGCUCCCGCgggGCCCaagGCUCCCg -3'
miRNA:   3'- -GGGUcgCGGGGGCG---UGGGgg-CGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 229 0.78 0.056717
Target:  5'- gCCCcG-GCCCCCGCGgCCCCGCUCUCc -3'
miRNA:   3'- -GGGuCgCGGGGGCGUgGGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 278 0.66 0.355254
Target:  5'- uCCCGcGCGCgCUCCGcCGCCguccggCCGCgCCCg -3'
miRNA:   3'- -GGGU-CGCG-GGGGC-GUGGg-----GGCGgGGG- -5'
21461 5' -69.2 NC_004812.1 + 291 0.74 0.116979
Target:  5'- cCUCGGCcccCUCCCGU-CCCCCGCCCUCc -3'
miRNA:   3'- -GGGUCGc--GGGGGCGuGGGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 341 0.66 0.384595
Target:  5'- cCCCuccCGUCCCC---CUCCCGUCCCCc -3'
miRNA:   3'- -GGGuc-GCGGGGGcguGGGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 374 0.67 0.345365
Target:  5'- cCCCuccCGCCCC-GCucuccgucucuccCCCCCGUCCCUc -3'
miRNA:   3'- -GGGuc-GCGGGGgCGu------------GGGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 380 0.85 0.017692
Target:  5'- gCCGGCGCaUCCCGCgGCgCCCCGCCCCCc -3'
miRNA:   3'- gGGUCGCG-GGGGCG-UG-GGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 415 0.77 0.064088
Target:  5'- cCCCAGCgGCCCCCuCcCCCCCuCCCCUu -3'
miRNA:   3'- -GGGUCG-CGGGGGcGuGGGGGcGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 429 0.72 0.151403
Target:  5'- gCgCGGCGCUCUCGCGCgCgCCCGCCgcgagCCCg -3'
miRNA:   3'- -GgGUCGCGGGGGCGUG-G-GGGCGG-----GGG- -5'
21461 5' -69.2 NC_004812.1 + 460 0.76 0.081698
Target:  5'- uCCC-GCGCgUCCCGCGCCCCgCGUCCgCg -3'
miRNA:   3'- -GGGuCGCG-GGGGCGUGGGG-GCGGGgG- -5'
21461 5' -69.2 NC_004812.1 + 468 0.67 0.334305
Target:  5'- gCCGGCGCgCCUGCgugcgcacGCgCCUGCUgCCCg -3'
miRNA:   3'- gGGUCGCGgGGGCG--------UGgGGGCGG-GGG- -5'
21461 5' -69.2 NC_004812.1 + 506 0.8 0.03732
Target:  5'- uCCCGGCccccgGUCCCCGCuguCUCCCGCCCCg -3'
miRNA:   3'- -GGGUCG-----CGGGGGCGu--GGGGGCGGGGg -5'
21461 5' -69.2 NC_004812.1 + 531 0.77 0.064088
Target:  5'- gCCCGcGCGCCCgggcccucCCGC-CUCCCGCCCCg -3'
miRNA:   3'- -GGGU-CGCGGG--------GGCGuGGGGGCGGGGg -5'
21461 5' -69.2 NC_004812.1 + 601 0.72 0.151403
Target:  5'- cCCgGGCGUCCCCu--CCCCCGCgCCg -3'
miRNA:   3'- -GGgUCGCGGGGGcguGGGGGCGgGGg -5'
21461 5' -69.2 NC_004812.1 + 680 0.88 0.010457
Target:  5'- cCCCGGCGCUCCCGCGgCCCgGCCUCCu -3'
miRNA:   3'- -GGGUCGCGGGGGCGUgGGGgCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 719 0.74 0.116979
Target:  5'- cCCgGGCGCcggCCCCGCcccUCCCCuCCCCCg -3'
miRNA:   3'- -GGgUCGCG---GGGGCGu--GGGGGcGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 768 0.67 0.34817
Target:  5'- uCCCGGCGCCg-CGgGCCCCUucuggGCCUCg -3'
miRNA:   3'- -GGGUCGCGGggGCgUGGGGG-----CGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.