miRNA display CGI


Results 1 - 20 of 1308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21461 5' -69.2 NC_004812.1 + 84560 0.98 0.001844
Target:  5'- cCCCAGCGCCCCCGaC-CCCCCGCCCCCc -3'
miRNA:   3'- -GGGUCGCGGGGGC-GuGGGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 113550 0.94 0.003639
Target:  5'- cCCCAcCGCCCCCGCACCCCCaccGCCCCCg -3'
miRNA:   3'- -GGGUcGCGGGGGCGUGGGGG---CGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 113584 0.94 0.003639
Target:  5'- cCCCAcCGCCCCCGCACCCCCaccGCCCCCg -3'
miRNA:   3'- -GGGUcGCGGGGGCGUGGGGG---CGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 113618 0.93 0.00434
Target:  5'- cCCCAcCGCCCCCGCACCCCC-CCCCCa -3'
miRNA:   3'- -GGGUcGCGGGGGCGUGGGGGcGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 34141 0.93 0.004451
Target:  5'- aCCCGGCGCCcgccaggggcgCCCGCGCCCCCGCCgCCCg -3'
miRNA:   3'- -GGGUCGCGG-----------GGGCGUGGGGGCGG-GGG- -5'
21461 5' -69.2 NC_004812.1 + 3240 0.93 0.004451
Target:  5'- aCCCGGCGCCcgccaggggcgCCCGCGCCCCCGCCgCCCg -3'
miRNA:   3'- -GGGUCGCGG-----------GGGCGUGGGGGCGG-GGG- -5'
21461 5' -69.2 NC_004812.1 + 150884 0.9 0.007546
Target:  5'- gCCCGGCGCCcuccuCCCGCggcagACCCCCGCCCCCc -3'
miRNA:   3'- -GGGUCGCGG-----GGGCG-----UGGGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 119983 0.9 0.007546
Target:  5'- gCCCGGCGCCcuccuCCCGCggcagACCCCCGCCCCCc -3'
miRNA:   3'- -GGGUCGCGG-----GGGCG-----UGGGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 77613 0.89 0.008773
Target:  5'- cCCCGGCGCaCCCCcgacccccggcGCACCCCCGaCCCCCg -3'
miRNA:   3'- -GGGUCGCG-GGGG-----------CGUGGGGGC-GGGGG- -5'
21461 5' -69.2 NC_004812.1 + 143238 0.88 0.010198
Target:  5'- cCCCGGCGCggaagggaCCgCCGCACCCCCGaCCCCCg -3'
miRNA:   3'- -GGGUCGCG--------GG-GGCGUGGGGGC-GGGGG- -5'
21461 5' -69.2 NC_004812.1 + 680 0.88 0.010457
Target:  5'- cCCCGGCGCUCCCGCGgCCCgGCCUCCu -3'
miRNA:   3'- -GGGUCGCGGGGGCGUgGGGgCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 126188 0.88 0.010457
Target:  5'- cCCCGGCGCUCCCGCGgCCCgGCCUCCu -3'
miRNA:   3'- -GGGUCGCGGGGGCGUgGGGgCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 132465 0.87 0.011274
Target:  5'- cCCCGuuucGCGCCCCCccuuccccCACCCCCGCCCCCa -3'
miRNA:   3'- -GGGU----CGCGGGGGc-------GUGGGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 3430 0.87 0.011532
Target:  5'- cUCCGGCGCCgCCGCGCCCCCcgugguccccgugGCCCCCc -3'
miRNA:   3'- -GGGUCGCGGgGGCGUGGGGG-------------CGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 34331 0.87 0.011532
Target:  5'- cUCCGGCGCCgCCGCGCCCCCcgugguccccgugGCCCCCc -3'
miRNA:   3'- -GGGUCGCGGgGGCGUGGGGG-------------CGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 3344 0.86 0.014126
Target:  5'- gCCGcCGCgCCCCGCGCCCCgGCCCCCg -3'
miRNA:   3'- gGGUcGCG-GGGGCGUGGGGgCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 34245 0.86 0.014126
Target:  5'- gCCGcCGCgCCCCGCGCCCCgGCCCCCg -3'
miRNA:   3'- gGGUcGCG-GGGGCGUGGGGgCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 55033 0.86 0.014851
Target:  5'- aCCCGGCGUgCCUGUACCCgUGCCCCCa -3'
miRNA:   3'- -GGGUCGCGgGGGCGUGGGgGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 118028 0.86 0.014851
Target:  5'- cCCCcGCGCCCgCC-CACCCCCGCUCCCg -3'
miRNA:   3'- -GGGuCGCGGG-GGcGUGGGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 148929 0.86 0.014851
Target:  5'- cCCCcGCGCCCgCC-CACCCCCGCUCCCg -3'
miRNA:   3'- -GGGuCGCGGG-GGcGUGGGGGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.