miRNA display CGI


Results 21 - 40 of 1308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21461 5' -69.2 NC_004812.1 + 770 0.71 0.165678
Target:  5'- cCCCgucugAGgGCCCcgcgggagaugggCCGcCGCCCCCGCCgCCg -3'
miRNA:   3'- -GGG-----UCgCGGG-------------GGC-GUGGGGGCGGgGG- -5'
21461 5' -69.2 NC_004812.1 + 841 0.7 0.217887
Target:  5'- gCCCGGaggGCCCCgCGCGugUCCCCGCggccgcgagCCCCn -3'
miRNA:   3'- -GGGUCg--CGGGG-GCGU--GGGGGCG---------GGGG- -5'
21461 5' -69.2 NC_004812.1 + 882 0.81 0.032973
Target:  5'- gCCCGcgcGCGCCCCC-CACCCCCcacCCCCCu -3'
miRNA:   3'- -GGGU---CGCGGGGGcGUGGGGGc--GGGGG- -5'
21461 5' -69.2 NC_004812.1 + 915 0.7 0.194786
Target:  5'- cCCCA-CGCCCUCGCGCgCgCCgaGCCCgCCg -3'
miRNA:   3'- -GGGUcGCGGGGGCGUG-G-GGg-CGGG-GG- -5'
21461 5' -69.2 NC_004812.1 + 975 0.73 0.132547
Target:  5'- gCCCGGCGUgCCCGCccccgaucucacuagGCCugcccggccggggCCgCGCCCCCg -3'
miRNA:   3'- -GGGUCGCGgGGGCG---------------UGG-------------GG-GCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 1037 0.81 0.031144
Target:  5'- gCCCGGcCGCCCgCGCGcgccccuccccccuCCCCCGCCCCUc -3'
miRNA:   3'- -GGGUC-GCGGGgGCGU--------------GGGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 1127 0.68 0.295166
Target:  5'- gCCGGgGCCCaUCGCAUCUCCggaGCUCCUu -3'
miRNA:   3'- gGGUCgCGGG-GGCGUGGGGG---CGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 1164 0.79 0.05017
Target:  5'- gCCCGGC-CCCCCGCuCCCUCGUCgCCg -3'
miRNA:   3'- -GGGUCGcGGGGGCGuGGGGGCGGgGG- -5'
21461 5' -69.2 NC_004812.1 + 1208 0.67 0.307803
Target:  5'- aCCA-CGCCCggCC-CGgCCCgGCCCCCg -3'
miRNA:   3'- gGGUcGCGGG--GGcGUgGGGgCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 1318 0.78 0.061035
Target:  5'- cCCCGG-GCCCcgCCGCG-CCCCGCCCCUn -3'
miRNA:   3'- -GGGUCgCGGG--GGCGUgGGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 1345 0.78 0.056717
Target:  5'- cCCCgguuuGGCGUCCgCCGCGCCCCCccucggcccGCCCUCg -3'
miRNA:   3'- -GGG-----UCGCGGG-GGCGUGGGGG---------CGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 1377 0.73 0.11978
Target:  5'- gCCguGCGCgacggcccgCCCCGCGCCg-CGCCCCCu -3'
miRNA:   3'- -GGguCGCG---------GGGGCGUGGggGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 1440 0.75 0.089966
Target:  5'- -gCGGgGCCCCgGU--CCCCGCCCCCa -3'
miRNA:   3'- ggGUCgCGGGGgCGugGGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 1469 0.68 0.276974
Target:  5'- gCCCu-CGaCCCgGC-CCCCCGCCgCCg -3'
miRNA:   3'- -GGGucGCgGGGgCGuGGGGGCGGgGG- -5'
21461 5' -69.2 NC_004812.1 + 1512 0.77 0.068779
Target:  5'- gCCC-GCGCCgCCGCgcgagggcaugccGCCgCCGCCCCCc -3'
miRNA:   3'- -GGGuCGCGGgGGCG-------------UGGgGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 1523 0.72 0.151403
Target:  5'- --gGGcCGUCCCCGgGCgCCCGCCCUCu -3'
miRNA:   3'- gggUC-GCGGGGGCgUGgGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 1579 0.79 0.047763
Target:  5'- gCCCGGguccCCCCCGCACggcuCCCCGCCUCCg -3'
miRNA:   3'- -GGGUCgc--GGGGGCGUG----GGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 1630 0.71 0.173855
Target:  5'- aCCguGCGCgcgggUCCCGCGcggcCCgCCCGUCCCCc -3'
miRNA:   3'- -GGguCGCG-----GGGGCGU----GG-GGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 1678 0.69 0.232846
Target:  5'- cCCCGcgucCGCCuCCCGaaagcggACCCCCGCCCg- -3'
miRNA:   3'- -GGGUc---GCGG-GGGCg------UGGGGGCGGGgg -5'
21461 5' -69.2 NC_004812.1 + 1735 0.83 0.023223
Target:  5'- cCCCGcGCGCCUCCGCggcccgaGCCCgCGCCCCCu -3'
miRNA:   3'- -GGGU-CGCGGGGGCG-------UGGGgGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.