miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21465 3' -54.1 NC_004812.1 + 54207 0.66 0.966932
Target:  5'- -aGACGCCGCccGCGGgcgcuucCGUCGUGc- -3'
miRNA:   3'- ccUUGCGGCGa-CGUCau-----GCAGCACac -5'
21465 3' -54.1 NC_004812.1 + 138561 0.66 0.966932
Target:  5'- uGAACGCCucGCUGCuGGUGCcgGUCGUc-- -3'
miRNA:   3'- cCUUGCGG--CGACG-UCAUG--CAGCAcac -5'
21465 3' -54.1 NC_004812.1 + 28696 0.66 0.963676
Target:  5'- gGGGcuggccGCGCCGCUGCGGccCGUCu---- -3'
miRNA:   3'- -CCU------UGCGGCGACGUCauGCAGcacac -5'
21465 3' -54.1 NC_004812.1 + 154204 0.66 0.963676
Target:  5'- gGGGcuggccGCGCCGCUGCGGccCGUCu---- -3'
miRNA:   3'- -CCU------UGCGGCGACGUCauGCAGcacac -5'
21465 3' -54.1 NC_004812.1 + 138505 0.66 0.960203
Target:  5'- cGAGCGCCGC-GUcGUcCG-CGUGUGc -3'
miRNA:   3'- cCUUGCGGCGaCGuCAuGCaGCACAC- -5'
21465 3' -54.1 NC_004812.1 + 156194 0.66 0.956507
Target:  5'- aGAGCGCCGCgcGCGGaaggccUGCGcgCGUGg- -3'
miRNA:   3'- cCUUGCGGCGa-CGUC------AUGCa-GCACac -5'
21465 3' -54.1 NC_004812.1 + 58699 0.66 0.956507
Target:  5'- gGGGGCuuGCCGUUGgGGaacaGCGUCGcGUGg -3'
miRNA:   3'- -CCUUG--CGGCGACgUCa---UGCAGCaCAC- -5'
21465 3' -54.1 NC_004812.1 + 125293 0.66 0.956507
Target:  5'- aGAGCGCCGCgcGCGGaaggccUGCGcgCGUGg- -3'
miRNA:   3'- cCUUGCGGCGa-CGUC------AUGCa-GCACac -5'
21465 3' -54.1 NC_004812.1 + 87174 0.66 0.956507
Target:  5'- aGGAuGCGCCGCgUGCGGccgGCGUCc---- -3'
miRNA:   3'- -CCU-UGCGGCG-ACGUCa--UGCAGcacac -5'
21465 3' -54.1 NC_004812.1 + 60268 0.66 0.956507
Target:  5'- cGGGGCGCCGgUgGCGuUGCGUCGcGa- -3'
miRNA:   3'- -CCUUGCGGCgA-CGUcAUGCAGCaCac -5'
21465 3' -54.1 NC_004812.1 + 60876 0.66 0.952585
Target:  5'- cGAGCGCCagauCUGCAGgcggaaGUCGgcgGUGg -3'
miRNA:   3'- cCUUGCGGc---GACGUCaug---CAGCa--CAC- -5'
21465 3' -54.1 NC_004812.1 + 57922 0.66 0.952585
Target:  5'- aGGAGCGCCaGCcaguccucaaucUGCAGcUGCGgCGUGc- -3'
miRNA:   3'- -CCUUGCGG-CG------------ACGUC-AUGCaGCACac -5'
21465 3' -54.1 NC_004812.1 + 24858 0.66 0.952585
Target:  5'- cGGGcgGCGCgGCUGCGGggGCGUCc---- -3'
miRNA:   3'- -CCU--UGCGgCGACGUCa-UGCAGcacac -5'
21465 3' -54.1 NC_004812.1 + 48298 0.67 0.948431
Target:  5'- uGGGACGCaCGCgcgUGCGGgcucggGCGUgGUGc- -3'
miRNA:   3'- -CCUUGCG-GCG---ACGUCa-----UGCAgCACac -5'
21465 3' -54.1 NC_004812.1 + 5334 0.67 0.948431
Target:  5'- cGGGGCGCCGCccggggucgGCGGgggcgcggcgGCGUCGaUGa- -3'
miRNA:   3'- -CCUUGCGGCGa--------CGUCa---------UGCAGC-ACac -5'
21465 3' -54.1 NC_004812.1 + 138830 0.67 0.948431
Target:  5'- aGGGACGCCGCUGCG---UGUCc---- -3'
miRNA:   3'- -CCUUGCGGCGACGUcauGCAGcacac -5'
21465 3' -54.1 NC_004812.1 + 130842 0.67 0.948431
Target:  5'- cGGGGCGCCGCccggggucgGCGGgggcgcggcgGCGUCGaUGa- -3'
miRNA:   3'- -CCUUGCGGCGa--------CGUCa---------UGCAGC-ACac -5'
21465 3' -54.1 NC_004812.1 + 58441 0.67 0.934554
Target:  5'- cGGAGcCGCCGgUGCuGU-CGUCGcccaccucgcUGUGg -3'
miRNA:   3'- -CCUU-GCGGCgACGuCAuGCAGC----------ACAC- -5'
21465 3' -54.1 NC_004812.1 + 104699 0.67 0.92945
Target:  5'- uGGGcCGCCGCcaUGCGG-GCGUgCGUGg- -3'
miRNA:   3'- -CCUuGCGGCG--ACGUCaUGCA-GCACac -5'
21465 3' -54.1 NC_004812.1 + 11310 0.67 0.92945
Target:  5'- cGGGGCGCCGCgggGCGGgg-GcCG-GUGg -3'
miRNA:   3'- -CCUUGCGGCGa--CGUCaugCaGCaCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.