miRNA display CGI


Results 41 - 60 of 601 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21476 3' -60.8 NC_004812.1 + 155738 0.66 0.749006
Target:  5'- cCCCgGCGaCCCCGGaccccCAGGAcCCCCaGGa -3'
miRNA:   3'- -GGG-CGCaGGGGCC-----GUCUUuGGGGcUC- -5'
21476 3' -60.8 NC_004812.1 + 116425 0.66 0.749006
Target:  5'- gCCCGCG-CCCUGGgGacGGCCUgCGGGg -3'
miRNA:   3'- -GGGCGCaGGGGCCgUcuUUGGG-GCUC- -5'
21476 3' -60.8 NC_004812.1 + 20228 0.66 0.749006
Target:  5'- cCCUGCGUcaugggccaggCCUCcGCGGGcAGCUCCGAGa -3'
miRNA:   3'- -GGGCGCA-----------GGGGcCGUCU-UUGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 155491 0.66 0.749006
Target:  5'- -aUGCGaugggCCCCGGC-GAAGCgaCCCGGGc -3'
miRNA:   3'- ggGCGCa----GGGGCCGuCUUUG--GGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 152011 0.66 0.749006
Target:  5'- aCCCGag-CCCCGGguCGGggGCgggucggcgggCCCGGGg -3'
miRNA:   3'- -GGGCgcaGGGGCC--GUCuuUG-----------GGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 128546 0.66 0.749006
Target:  5'- aCUGCGaCCCCacGGaCGGAuggaugAGCUCCGAGg -3'
miRNA:   3'- gGGCGCaGGGG--CC-GUCU------UUGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 131409 0.66 0.749006
Target:  5'- -aCGCGUCCUgGGCGGAcguGCgCgCGGGc -3'
miRNA:   3'- ggGCGCAGGGgCCGUCUu--UG-GgGCUC- -5'
21476 3' -60.8 NC_004812.1 + 91524 0.66 0.749006
Target:  5'- cUCCGCGgggcgcgcggCCagggCGGCGGcgGCCgCCGAGa -3'
miRNA:   3'- -GGGCGCa---------GGg---GCCGUCuuUGG-GGCUC- -5'
21476 3' -60.8 NC_004812.1 + 85705 0.66 0.749006
Target:  5'- uCCCGCccCCCCGcGC-GAGAuCCCCGc- -3'
miRNA:   3'- -GGGCGcaGGGGC-CGuCUUU-GGGGCuc -5'
21476 3' -60.8 NC_004812.1 + 95551 0.66 0.749006
Target:  5'- gUCGCG-CCCCGGCGGGG---UCGAGc -3'
miRNA:   3'- gGGCGCaGGGGCCGUCUUuggGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 109703 0.66 0.749006
Target:  5'- gCCGCGgcggcggCCgCCGcGCcc-GACCCCGGGg -3'
miRNA:   3'- gGGCGCa------GG-GGC-CGucuUUGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 124837 0.66 0.749006
Target:  5'- cCCCgGCGaCCCCGGaccccCAGGAcCCCCaGGa -3'
miRNA:   3'- -GGG-CGCaGGGGCC-----GUCUUuGGGGcUC- -5'
21476 3' -60.8 NC_004812.1 + 93616 0.66 0.749006
Target:  5'- gCCCGCGcuucCgCCCGGaAGAAGUCCCGGu -3'
miRNA:   3'- -GGGCGCa---G-GGGCCgUCUUUGGGGCUc -5'
21476 3' -60.8 NC_004812.1 + 146210 0.66 0.749006
Target:  5'- cUCCGUGaUCCCCcucaccccgccGGCccAGAc-CCCCGAGg -3'
miRNA:   3'- -GGGCGC-AGGGG-----------CCG--UCUuuGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 124590 0.66 0.749006
Target:  5'- -aUGCGaugggCCCCGGC-GAAGCgaCCCGGGc -3'
miRNA:   3'- ggGCGCa----GGGGCCGuCUUUG--GGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 13577 0.66 0.749006
Target:  5'- gCCggaGCGaguuUCCCCGGgGGGAACUCCa-- -3'
miRNA:   3'- -GGg--CGC----AGGGGCCgUCUUUGGGGcuc -5'
21476 3' -60.8 NC_004812.1 + 121110 0.66 0.749006
Target:  5'- aCCCGag-CCCCGGguCGGggGCgggucggcgggCCCGGGg -3'
miRNA:   3'- -GGGCgcaGGGGCC--GUCuuUG-----------GGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 103917 0.66 0.748086
Target:  5'- gCCCGUccccgaagcccagGUCCUCGaGCAGGcgguuauagagGGCCgCCGGGg -3'
miRNA:   3'- -GGGCG-------------CAGGGGC-CGUCU-----------UUGG-GGCUC- -5'
21476 3' -60.8 NC_004812.1 + 48324 0.66 0.748086
Target:  5'- gCCGCGg-CCgaggccgcaacggCGGCGGAcGCCgCCGAGg -3'
miRNA:   3'- gGGCGCagGG-------------GCCGUCUuUGG-GGCUC- -5'
21476 3' -60.8 NC_004812.1 + 31031 0.66 0.746245
Target:  5'- gCCgGCGguugaaCCCCaGGCAGAGGuaggcguagcucucCCCCGGc -3'
miRNA:   3'- -GGgCGCa-----GGGG-CCGUCUUU--------------GGGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.