miRNA display CGI


Results 21 - 40 of 855 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21478 5' -63.5 NC_004812.1 + 147440 0.66 0.578547
Target:  5'- gGGUCUguAGGUGcGCGGacgGCU-GGUCGCa -3'
miRNA:   3'- -CCGGA--UCCGC-CGCCg--CGAgCCAGCGg -5'
21478 5' -63.5 NC_004812.1 + 44026 0.66 0.597684
Target:  5'- aGGCUccGGCGGCcGCGCgucaccugcgcgUCGGacggcgCGCCc -3'
miRNA:   3'- -CCGGauCCGCCGcCGCG------------AGCCa-----GCGG- -5'
21478 5' -63.5 NC_004812.1 + 104992 0.66 0.613061
Target:  5'- cGGCCgcGGGCcgccGCGGCGCcccucgcgccccgCGGU-GCCg -3'
miRNA:   3'- -CCGGa-UCCGc---CGCCGCGa------------GCCAgCGG- -5'
21478 5' -63.5 NC_004812.1 + 75325 0.66 0.606328
Target:  5'- cGGCgUAGGCcguguccuugaccGGCGccugguccacGCGCUCGaG-CGCCc -3'
miRNA:   3'- -CCGgAUCCG-------------CCGC----------CGCGAGC-CaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 52599 0.66 0.597684
Target:  5'- aGGCCcgcgaacaGGGCGGCGuGCGCgUCGGcCu-- -3'
miRNA:   3'- -CCGGa-------UCCGCCGC-CGCG-AGCCaGcgg -5'
21478 5' -63.5 NC_004812.1 + 107537 0.66 0.607289
Target:  5'- uGGCCUGGGCgacgagcacgucGGCGGa-CUUGucCGCCg -3'
miRNA:   3'- -CCGGAUCCG------------CCGCCgcGAGCcaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 76812 0.66 0.616911
Target:  5'- cGGCgCgcaGGGCGGC-GCGCaccucCGGgggcgCGCCu -3'
miRNA:   3'- -CCG-Ga--UCCGCCGcCGCGa----GCCa----GCGG- -5'
21478 5' -63.5 NC_004812.1 + 3821 0.66 0.578547
Target:  5'- cGGCCUGcGGCcccgccccaGGCcccgccccucuGCGCcgUGGUCGCCg -3'
miRNA:   3'- -CCGGAU-CCG---------CCGc----------CGCGa-GCCAGCGG- -5'
21478 5' -63.5 NC_004812.1 + 35807 0.66 0.607289
Target:  5'- cGUCUcgGGGCcGUGGgGCUgGGcgUCGCCg -3'
miRNA:   3'- cCGGA--UCCGcCGCCgCGAgCC--AGCGG- -5'
21478 5' -63.5 NC_004812.1 + 1326 0.66 0.597684
Target:  5'- cGGUCcgcGGGCGGUccGCGggCGGUcCGCCg -3'
miRNA:   3'- -CCGGa--UCCGCCGc-CGCgaGCCA-GCGG- -5'
21478 5' -63.5 NC_004812.1 + 64145 0.66 0.616911
Target:  5'- cGCgaucgGGGaCGGCGGCGCggCGGgcuccgCGCg -3'
miRNA:   3'- cCGga---UCC-GCCGCCGCGa-GCCa-----GCGg -5'
21478 5' -63.5 NC_004812.1 + 77396 0.66 0.588102
Target:  5'- cGGCCaggucGGCGGgGGC-CUCcaGGucUCGCCc -3'
miRNA:   3'- -CCGGau---CCGCCgCCGcGAG--CC--AGCGG- -5'
21478 5' -63.5 NC_004812.1 + 113067 0.66 0.616911
Target:  5'- cGGCCgcGGCGGCaGCGagccgCGacacCGCCg -3'
miRNA:   3'- -CCGGauCCGCCGcCGCga---GCca--GCGG- -5'
21478 5' -63.5 NC_004812.1 + 121734 0.66 0.607289
Target:  5'- uGCCcGGGcCGGC-GCGCggCGGggggCGCCn -3'
miRNA:   3'- cCGGaUCC-GCCGcCGCGa-GCCa---GCGG- -5'
21478 5' -63.5 NC_004812.1 + 99971 0.66 0.616911
Target:  5'- gGGCCgugccGGCGGgGGCcaggcaGCUCGccaGCCu -3'
miRNA:   3'- -CCGGau---CCGCCgCCG------CGAGCcagCGG- -5'
21478 5' -63.5 NC_004812.1 + 105884 0.66 0.591932
Target:  5'- cGCCgcagaagcucucccgUGGGCgaacGGCGGCGC--GGcUCGCCg -3'
miRNA:   3'- cCGG---------------AUCCG----CCGCCGCGagCC-AGCGG- -5'
21478 5' -63.5 NC_004812.1 + 75107 0.66 0.588102
Target:  5'- cGUCUuGGCcGCGGcCGC-CGGgaUCGCCg -3'
miRNA:   3'- cCGGAuCCGcCGCC-GCGaGCC--AGCGG- -5'
21478 5' -63.5 NC_004812.1 + 116506 0.66 0.597684
Target:  5'- gGGUCgcGGaCGGaCGcGCGCcCGGcCGCCc -3'
miRNA:   3'- -CCGGauCC-GCC-GC-CGCGaGCCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 62361 0.66 0.607289
Target:  5'- cGCCggagauGcGCGuCGGCGUgcacgaCGGUCGCCu -3'
miRNA:   3'- cCGGau----C-CGCcGCCGCGa-----GCCAGCGG- -5'
21478 5' -63.5 NC_004812.1 + 137605 0.66 0.597684
Target:  5'- cGGCCUggugaucuucgAGGCGGCcGUGCacaCGG-CGUCc -3'
miRNA:   3'- -CCGGA-----------UCCGCCGcCGCGa--GCCaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.