miRNA display CGI


Results 1 - 20 of 855 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21478 5' -63.5 NC_004812.1 + 44162 0.65 0.633287
Target:  5'- cGGCgUAGaggguaucgaggguGUGcGCGGCGCUgGGggccacCGCCu -3'
miRNA:   3'- -CCGgAUC--------------CGC-CGCCGCGAgCCa-----GCGG- -5'
21478 5' -63.5 NC_004812.1 + 32557 0.65 0.634251
Target:  5'- cGCCgcucccccguuGGCcGCGGCGCcgCGGccCGCCc -3'
miRNA:   3'- cCGGau---------CCGcCGCCGCGa-GCCa-GCGG- -5'
21478 5' -63.5 NC_004812.1 + 153614 0.65 0.632324
Target:  5'- cGCCUGGGCcggcaacuggaccGGCccgcccgacgucucGGCGCUgGG-CGCg -3'
miRNA:   3'- cCGGAUCCG-------------CCG--------------CCGCGAgCCaGCGg -5'
21478 5' -63.5 NC_004812.1 + 1656 0.65 0.634251
Target:  5'- cGCCgcucccccguuGGCcGCGGCGCcgCGGccCGCCc -3'
miRNA:   3'- cCGGau---------CCGcCGCCGCGa-GCCa-GCGG- -5'
21478 5' -63.5 NC_004812.1 + 106732 0.65 0.633287
Target:  5'- gGGCgaGGGCgacgaGGCcuacuacgucauggGGCGCUC-GUCGCUg -3'
miRNA:   3'- -CCGgaUCCG-----CCG--------------CCGCGAGcCAGCGG- -5'
21478 5' -63.5 NC_004812.1 + 28105 0.65 0.632324
Target:  5'- cGCCUGGGCcggcaacuggaccGGCccgcccgacgucucGGCGCUgGG-CGCg -3'
miRNA:   3'- cCGGAUCCG-------------CCG--------------CCGCGAgCCaGCGg -5'
21478 5' -63.5 NC_004812.1 + 3821 0.66 0.578547
Target:  5'- cGGCCUGcGGCcccgccccaGGCcccgccccucuGCGCcgUGGUCGCCg -3'
miRNA:   3'- -CCGGAU-CCG---------CCGc----------CGCGa-GCCAGCGG- -5'
21478 5' -63.5 NC_004812.1 + 85624 0.66 0.591932
Target:  5'- cGGCCgacccgcGGGCcccGCGGUGCUCucccgggcaggucgaGG-CGCCg -3'
miRNA:   3'- -CCGGa------UCCGc--CGCCGCGAG---------------CCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 109486 0.66 0.578547
Target:  5'- cGGCaucGuGCGGCGGCuGCUgCGucUCGCCg -3'
miRNA:   3'- -CCGgauC-CGCCGCCG-CGA-GCc-AGCGG- -5'
21478 5' -63.5 NC_004812.1 + 75107 0.66 0.588102
Target:  5'- cGUCUuGGCcGCGGcCGC-CGGgaUCGCCg -3'
miRNA:   3'- cCGGAuCCGcCGCC-GCGaGCC--AGCGG- -5'
21478 5' -63.5 NC_004812.1 + 44026 0.66 0.597684
Target:  5'- aGGCUccGGCGGCcGCGCgucaccugcgcgUCGGacggcgCGCCc -3'
miRNA:   3'- -CCGGauCCGCCGcCGCG------------AGCCa-----GCGG- -5'
21478 5' -63.5 NC_004812.1 + 67968 0.66 0.578547
Target:  5'- cGGCCacgaAGaugcCGGCGGCGCacUGGggCGCCg -3'
miRNA:   3'- -CCGGa---UCc---GCCGCCGCGa-GCCa-GCGG- -5'
21478 5' -63.5 NC_004812.1 + 70036 0.66 0.597684
Target:  5'- cGGaC-AGGCGGgGGCGCUCGc-CGaCCu -3'
miRNA:   3'- -CCgGaUCCGCCgCCGCGAGCcaGC-GG- -5'
21478 5' -63.5 NC_004812.1 + 39834 0.66 0.588102
Target:  5'- cGGCCgcgugcccgUAGGCGGUgcggGGgGC-CGGgggcucCGCCa -3'
miRNA:   3'- -CCGG---------AUCCGCCG----CCgCGaGCCa-----GCGG- -5'
21478 5' -63.5 NC_004812.1 + 77396 0.66 0.588102
Target:  5'- cGGCCaggucGGCGGgGGC-CUCcaGGucUCGCCc -3'
miRNA:   3'- -CCGGau---CCGCCgCCGcGAG--CC--AGCGG- -5'
21478 5' -63.5 NC_004812.1 + 32105 0.66 0.597684
Target:  5'- cGCCU-GGUGGgccaUGGCGCccuggCGGagGCCg -3'
miRNA:   3'- cCGGAuCCGCC----GCCGCGa----GCCagCGG- -5'
21478 5' -63.5 NC_004812.1 + 1326 0.66 0.597684
Target:  5'- cGGUCcgcGGGCGGUccGCGggCGGUcCGCCg -3'
miRNA:   3'- -CCGGa--UCCGCCGc-CGCgaGCCA-GCGG- -5'
21478 5' -63.5 NC_004812.1 + 52599 0.66 0.597684
Target:  5'- aGGCCcgcgaacaGGGCGGCGuGCGCgUCGGcCu-- -3'
miRNA:   3'- -CCGGa-------UCCGCCGC-CGCG-AGCCaGcgg -5'
21478 5' -63.5 NC_004812.1 + 60863 0.66 0.597684
Target:  5'- aGGUUcgGGGCGcGCGGCugggcuccagguGC-CGGcCGCCg -3'
miRNA:   3'- -CCGGa-UCCGC-CGCCG------------CGaGCCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 74516 0.66 0.597684
Target:  5'- cGGCCagcAGGCGGCccagGGCG-UCGG-CGUUc -3'
miRNA:   3'- -CCGGa--UCCGCCG----CCGCgAGCCaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.