miRNA display CGI


Results 1 - 20 of 855 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21478 5' -63.5 NC_004812.1 + 72508 1.13 0.000401
Target:  5'- gGGCCUAGGCGGCGGCGCUCGGUCGCCg -3'
miRNA:   3'- -CCGGAUCCGCCGCCGCGAGCCAGCGG- -5'
21478 5' -63.5 NC_004812.1 + 37067 0.85 0.036596
Target:  5'- gGGCCUGGGCGGCgGGgGUUgGGUCGCg -3'
miRNA:   3'- -CCGGAUCCGCCG-CCgCGAgCCAGCGg -5'
21478 5' -63.5 NC_004812.1 + 6166 0.85 0.036596
Target:  5'- gGGCCUGGGCGGCgGGgGUUgGGUCGCg -3'
miRNA:   3'- -CCGGAUCCGCCG-CCgCGAgCCAGCGg -5'
21478 5' -63.5 NC_004812.1 + 94287 0.84 0.043685
Target:  5'- cGGCCcGGGCGuGCGccuggguGCGCUUGGUCGCCg -3'
miRNA:   3'- -CCGGaUCCGC-CGC-------CGCGAGCCAGCGG- -5'
21478 5' -63.5 NC_004812.1 + 41208 0.84 0.048515
Target:  5'- cGCCgcgcgGGGCGGCGacuacGCGCUgCGGUCGCCg -3'
miRNA:   3'- cCGGa----UCCGCCGC-----CGCGA-GCCAGCGG- -5'
21478 5' -63.5 NC_004812.1 + 123577 0.83 0.049643
Target:  5'- gGGCCgccggGGGCGGCGGCcgagcacacgcgcGCcCGGUCGCCc -3'
miRNA:   3'- -CCGGa----UCCGCCGCCG-------------CGaGCCAGCGG- -5'
21478 5' -63.5 NC_004812.1 + 98708 0.83 0.053727
Target:  5'- cGCCggGGGCGGCGGCGCggGGUCGUUc -3'
miRNA:   3'- cCGGa-UCCGCCGCCGCGagCCAGCGG- -5'
21478 5' -63.5 NC_004812.1 + 141196 0.82 0.063216
Target:  5'- aGGCCcgGGGCGGC-GCGCUCgacggccccggccacGGUCGCCa -3'
miRNA:   3'- -CCGGa-UCCGCCGcCGCGAG---------------CCAGCGG- -5'
21478 5' -63.5 NC_004812.1 + 137551 0.82 0.067518
Target:  5'- gGGCCUGGGCcGCGGU-CUCGGcCGCCg -3'
miRNA:   3'- -CCGGAUCCGcCGCCGcGAGCCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 98436 0.81 0.078545
Target:  5'- cGGCCgcgGGGCGGCaGGCGCggGGgCGCCc -3'
miRNA:   3'- -CCGGa--UCCGCCG-CCGCGagCCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 129737 0.8 0.084686
Target:  5'- gGGCCggGGGCGGCGGCGgCggcggCGGcggCGCCc -3'
miRNA:   3'- -CCGGa-UCCGCCGCCGC-Ga----GCCa--GCGG- -5'
21478 5' -63.5 NC_004812.1 + 128893 0.8 0.084686
Target:  5'- aGGCCUcgaGGGCGGCGGCGga-GGgCGCCg -3'
miRNA:   3'- -CCGGA---UCCGCCGCCGCgagCCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 3385 0.8 0.084686
Target:  5'- aGGCCUcgaGGGCGGCGGCGga-GGgCGCCg -3'
miRNA:   3'- -CCGGA---UCCGCCGCCGCgagCCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 136691 0.8 0.088588
Target:  5'- cGGCCgccggcgcgguGGCGGCGGCGCg-GGcCGCCg -3'
miRNA:   3'- -CCGGau---------CCGCCGCCGCGagCCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 94557 0.79 0.09595
Target:  5'- cGGCCcuGGUGGCGGgGCUCGGg-GCCu -3'
miRNA:   3'- -CCGGauCCGCCGCCgCGAGCCagCGG- -5'
21478 5' -63.5 NC_004812.1 + 68181 0.79 0.098367
Target:  5'- cGGCCgcGGGCGGgGGCGCgcCGGaCGCCc -3'
miRNA:   3'- -CCGGa-UCCGCCgCCGCGa-GCCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 4745 0.79 0.100841
Target:  5'- cGCCccGGgGGCGGCgGCUCGG-CGCCg -3'
miRNA:   3'- cCGGauCCgCCGCCG-CGAGCCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 130253 0.79 0.100841
Target:  5'- cGCCccGGgGGCGGCgGCUCGG-CGCCg -3'
miRNA:   3'- cCGGauCCgCCGCCG-CGAGCCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 96156 0.79 0.105704
Target:  5'- cGCCUuccgcugguucgaGGGCGGCGGCGaggUGGUCGCg -3'
miRNA:   3'- cCGGA-------------UCCGCCGCCGCga-GCCAGCGg -5'
21478 5' -63.5 NC_004812.1 + 9084 0.79 0.105967
Target:  5'- cGUCcAGGCGGCGGCGCgaagaCGG-CGCCu -3'
miRNA:   3'- cCGGaUCCGCCGCCGCGa----GCCaGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.