miRNA display CGI


Results 1 - 20 of 855 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21478 5' -63.5 NC_004812.1 + 49 0.77 0.142196
Target:  5'- gGGCCgcgGGcGCGGCGGCGC--GG-CGCCa -3'
miRNA:   3'- -CCGGa--UC-CGCCGCCGCGagCCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 99 0.7 0.400536
Target:  5'- gGGCCgGGGCGcgcGCGGgGC-CGGgagccCGCCc -3'
miRNA:   3'- -CCGGaUCCGC---CGCCgCGaGCCa----GCGG- -5'
21478 5' -63.5 NC_004812.1 + 418 0.71 0.318611
Target:  5'- aGGCCUuccGCGcGCGGCGCUCucgcgcgCGCCc -3'
miRNA:   3'- -CCGGAuc-CGC-CGCCGCGAGcca----GCGG- -5'
21478 5' -63.5 NC_004812.1 + 519 0.69 0.425095
Target:  5'- cGGCCgGGGCGGgccCGcGCGCcCGGgcccuccCGCCu -3'
miRNA:   3'- -CCGGaUCCGCC---GC-CGCGaGCCa------GCGG- -5'
21478 5' -63.5 NC_004812.1 + 542 0.68 0.503765
Target:  5'- aGCCggaAGGCGGCGacGCGCcgCGcGaCGCCc -3'
miRNA:   3'- cCGGa--UCCGCCGC--CGCGa-GC-CaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 699 0.7 0.400536
Target:  5'- cGGCCUccucGGC-GCGGCaGCcCGGgCGCCg -3'
miRNA:   3'- -CCGGAu---CCGcCGCCG-CGaGCCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 716 0.72 0.273384
Target:  5'- cGGCgUcGGCGcCGGCGC--GGUCGCCg -3'
miRNA:   3'- -CCGgAuCCGCcGCCGCGagCCAGCGG- -5'
21478 5' -63.5 NC_004812.1 + 1137 0.72 0.275824
Target:  5'- cGGCCgccAGGCuccccGGCGGCGCgagccCGGccccccgcucccucgUCGCCg -3'
miRNA:   3'- -CCGGa--UCCG-----CCGCCGCGa----GCC---------------AGCGG- -5'
21478 5' -63.5 NC_004812.1 + 1225 0.74 0.222467
Target:  5'- cGCCgcggGGGCuccuccccgcccgGGCGGCGCcgCGGcCGCCc -3'
miRNA:   3'- cCGGa---UCCG-------------CCGCCGCGa-GCCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 1284 0.66 0.620763
Target:  5'- cGGCCcccaggguccccggAGGCGG-GGCGCcgaccccCGGgcccCGCCg -3'
miRNA:   3'- -CCGGa-------------UCCGCCgCCGCGa------GCCa---GCGG- -5'
21478 5' -63.5 NC_004812.1 + 1326 0.66 0.597684
Target:  5'- cGGUCcgcGGGCGGUccGCGggCGGUcCGCCg -3'
miRNA:   3'- -CCGGa--UCCGCCGc-CGCgaGCCA-GCGG- -5'
21478 5' -63.5 NC_004812.1 + 1454 0.68 0.503765
Target:  5'- gGGCCgggcacGGCGGCGaCGC-CGG-CGUCc -3'
miRNA:   3'- -CCGGau----CCGCCGCcGCGaGCCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 1485 0.69 0.425095
Target:  5'- cGGC--GGGCGGCGGCggagcgccgGC-CGGcccgCGCCg -3'
miRNA:   3'- -CCGgaUCCGCCGCCG---------CGaGCCa---GCGG- -5'
21478 5' -63.5 NC_004812.1 + 1656 0.65 0.634251
Target:  5'- cGCCgcucccccguuGGCcGCGGCGCcgCGGccCGCCc -3'
miRNA:   3'- cCGGau---------CCGcCGCCGCGa-GCCa-GCGG- -5'
21478 5' -63.5 NC_004812.1 + 1999 0.73 0.261444
Target:  5'- gGGUCccGcCGGCGGuCGCUCGGggCGCCg -3'
miRNA:   3'- -CCGGauCcGCCGCC-GCGAGCCa-GCGG- -5'
21478 5' -63.5 NC_004812.1 + 2037 0.68 0.459194
Target:  5'- gGGCCUcGGuCGGCGGCGgggggcgCGGgggagggggcgCGCCc -3'
miRNA:   3'- -CCGGAuCC-GCCGCCGCga-----GCCa----------GCGG- -5'
21478 5' -63.5 NC_004812.1 + 2171 0.74 0.21291
Target:  5'- cGGCCaccuccacGGCGGCGGCGUcgucgucgUCGGcgagcagcgugUCGCCg -3'
miRNA:   3'- -CCGGau------CCGCCGCCGCG--------AGCC-----------AGCGG- -5'
21478 5' -63.5 NC_004812.1 + 2247 0.66 0.607289
Target:  5'- cGGCgc-GGCGGCGGgGUcCGcGUCGgCg -3'
miRNA:   3'- -CCGgauCCGCCGCCgCGaGC-CAGCgG- -5'
21478 5' -63.5 NC_004812.1 + 2364 0.73 0.238841
Target:  5'- gGGCCcGGcGCGcGCGGCGUcgCGGUccagCGCCa -3'
miRNA:   3'- -CCGGaUC-CGC-CGCCGCGa-GCCA----GCGG- -5'
21478 5' -63.5 NC_004812.1 + 2495 0.69 0.425095
Target:  5'- cGGCCUcgcGGGCGGgcgaguCGGCGgCgCGGcCGUCg -3'
miRNA:   3'- -CCGGA---UCCGCC------GCCGC-GaGCCaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.