miRNA display CGI


Results 1 - 20 of 855 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21478 5' -63.5 NC_004812.1 + 115451 0.77 0.135455
Target:  5'- cGCCU-GGCGGCGcGcCGCUgGGcUCGCCg -3'
miRNA:   3'- cCGGAuCCGCCGC-C-GCGAgCC-AGCGG- -5'
21478 5' -63.5 NC_004812.1 + 42017 0.78 0.122847
Target:  5'- gGGUCgauGGCGGgGGCGCgCGG-CGCCa -3'
miRNA:   3'- -CCGGau-CCGCCgCCGCGaGCCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 135610 0.78 0.125893
Target:  5'- cGGCCgaGGcGCGGCGGCgacgacgucGUUCGGUCGCa -3'
miRNA:   3'- -CCGGa-UC-CGCCGCCG---------CGAGCCAGCGg -5'
21478 5' -63.5 NC_004812.1 + 129435 0.78 0.125893
Target:  5'- gGGCCgcgcGGCGGCggcacGGCGCgcgCGGcCGCCa -3'
miRNA:   3'- -CCGGau--CCGCCG-----CCGCGa--GCCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 97119 0.77 0.129009
Target:  5'- gGGCCgcgccgccGCGGCGGCGCgccucuccgCGGUCGCg -3'
miRNA:   3'- -CCGGauc-----CGCCGCCGCGa--------GCCAGCGg -5'
21478 5' -63.5 NC_004812.1 + 129088 0.77 0.129009
Target:  5'- aGGCggcGGCGGCGGCGggCGGgcgCGCCg -3'
miRNA:   3'- -CCGgauCCGCCGCCGCgaGCCa--GCGG- -5'
21478 5' -63.5 NC_004812.1 + 32393 0.77 0.132196
Target:  5'- cGCC-AGGUGcgccGCGGC-CUCGGUCGCCg -3'
miRNA:   3'- cCGGaUCCGC----CGCCGcGAGCCAGCGG- -5'
21478 5' -63.5 NC_004812.1 + 83370 0.77 0.132196
Target:  5'- cGGCCccaGGGCGGCGGCGgUCcgcaggccGGcCGCCu -3'
miRNA:   3'- -CCGGa--UCCGCCGCCGCgAG--------CCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 90813 0.77 0.134469
Target:  5'- cGGCCU-GGCGGCgucguggagcacguGGCGC-CGG-CGCCg -3'
miRNA:   3'- -CCGGAuCCGCCG--------------CCGCGaGCCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 107306 0.78 0.114116
Target:  5'- gGGCCUuggggcguuccgGGGgGGCGGC-CgCGGUCGCCu -3'
miRNA:   3'- -CCGGA------------UCCgCCGCCGcGaGCCAGCGG- -5'
21478 5' -63.5 NC_004812.1 + 117611 0.79 0.10862
Target:  5'- gGGCCgggggagGGGgGGCGGCGCg-GGcCGCCg -3'
miRNA:   3'- -CCGGa------UCCgCCGCCGCGagCCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 96156 0.79 0.105704
Target:  5'- cGCCUuccgcugguucgaGGGCGGCGGCGaggUGGUCGCg -3'
miRNA:   3'- cCGGA-------------UCCGCCGCCGCga-GCCAGCGg -5'
21478 5' -63.5 NC_004812.1 + 94287 0.84 0.043685
Target:  5'- cGGCCcGGGCGuGCGccuggguGCGCUUGGUCGCCg -3'
miRNA:   3'- -CCGGaUCCGC-CGC-------CGCGAGCCAGCGG- -5'
21478 5' -63.5 NC_004812.1 + 98708 0.83 0.053727
Target:  5'- cGCCggGGGCGGCGGCGCggGGUCGUUc -3'
miRNA:   3'- cCGGa-UCCGCCGCCGCGagCCAGCGG- -5'
21478 5' -63.5 NC_004812.1 + 98436 0.81 0.078545
Target:  5'- cGGCCgcgGGGCGGCaGGCGCggGGgCGCCc -3'
miRNA:   3'- -CCGGa--UCCGCCG-CCGCGagCCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 128893 0.8 0.084686
Target:  5'- aGGCCUcgaGGGCGGCGGCGga-GGgCGCCg -3'
miRNA:   3'- -CCGGA---UCCGCCGCCGCgagCCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 129737 0.8 0.084686
Target:  5'- gGGCCggGGGCGGCGGCGgCggcggCGGcggCGCCc -3'
miRNA:   3'- -CCGGa-UCCGCCGCCGC-Ga----GCCa--GCGG- -5'
21478 5' -63.5 NC_004812.1 + 94557 0.79 0.09595
Target:  5'- cGGCCcuGGUGGCGGgGCUCGGg-GCCu -3'
miRNA:   3'- -CCGGauCCGCCGCCgCGAGCCagCGG- -5'
21478 5' -63.5 NC_004812.1 + 68181 0.79 0.098367
Target:  5'- cGGCCgcGGGCGGgGGCGCgcCGGaCGCCc -3'
miRNA:   3'- -CCGGa-UCCGCCgCCGCGa-GCCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 130253 0.79 0.100841
Target:  5'- cGCCccGGgGGCGGCgGCUCGG-CGCCg -3'
miRNA:   3'- cCGGauCCgCCGCCG-CGAGCCaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.